Protein–RNA interactions for Protein: Q96LT7

C9orf72, Guanine nucleotide exchange C9orf72, humanhuman

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf72Q96LT7 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
C9orf72Q96LT7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
C9orf72Q96LT7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
C9orf72Q96LT7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
C9orf72Q96LT7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.71■□□□□ 0.75
C9orf72Q96LT7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
C9orf72Q96LT7 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.74
C9orf72Q96LT7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 AC005082.1-201ENST00000413042 2259 ntBASIC19.7■□□□□ 0.74
C9orf72Q96LT7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
C9orf72Q96LT7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.69■□□□□ 0.74
C9orf72Q96LT7 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 FP475955.4-201ENST00000623131 1990 ntBASIC19.68■□□□□ 0.74
C9orf72Q96LT7 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 SDHAP1-207ENST00000440850 2000 ntBASIC19.68■□□□□ 0.74
C9orf72Q96LT7 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 AC128676.1-201ENST00000454392 318 ntBASIC19.68■□□□□ 0.74
C9orf72Q96LT7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
C9orf72Q96LT7 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 AC092368.3-202ENST00000574180 1591 ntBASIC19.67■□□□□ 0.74
C9orf72Q96LT7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 PNMA6B-201ENST00000538162 1200 ntBASIC19.67■□□□□ 0.74
C9orf72Q96LT7 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
C9orf72Q96LT7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms