Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 YBX1P10-201ENST00000444752 975 ntBASIC18.31■□□□□ 0.52
VMP1Q96GC9 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 RPS2P4-201ENST00000476944 856 ntBASIC18.31■□□□□ 0.52
VMP1Q96GC9 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 RARRES2P10-201ENST00000564312 460 ntBASIC18.31■□□□□ 0.52
VMP1Q96GC9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VMP1Q96GC9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.31■□□□□ 0.52
VMP1Q96GC9 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.3■□□□□ 0.52
VMP1Q96GC9 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VMP1Q96GC9 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.3■□□□□ 0.52
VMP1Q96GC9 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.3■□□□□ 0.52
VMP1Q96GC9 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.3■□□□□ 0.52
VMP1Q96GC9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VMP1Q96GC9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
VMP1Q96GC9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.3■□□□□ 0.52
VMP1Q96GC9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VMP1Q96GC9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 AC012618.2-201ENST00000428058 849 ntBASIC18.29■□□□□ 0.52
VMP1Q96GC9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.29■□□□□ 0.52
VMP1Q96GC9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VMP1Q96GC9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms