Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 AC069152.1-201ENST00000438030 544 ntBASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4AQ8WYN0 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 AL512353.2-201ENST00000448759 1962 ntBASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.85■□□□□ 0.77
ATG4AQ8WYN0 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4AQ8WYN0 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 AC093525.10-201ENST00000625130 1569 ntBASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 AC104771.1-201ENST00000603335 964 ntBASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
ATG4AQ8WYN0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATG4AQ8WYN0 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.83■□□□□ 0.76
ATG4AQ8WYN0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATG4AQ8WYN0 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms