Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
RNF4P78317 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF4P78317 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF4P78317 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF4P78317 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RNF4P78317 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF4P78317 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF4P78317 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF4P78317 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF4P78317 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF4P78317 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF4P78317 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
RNF4P78317 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF4P78317 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
RNF4P78317 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF4P78317 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF4P78317 NAPSB-206ENST00000562112 1266 ntBASIC17.73■□□□□ 0.43
RNF4P78317 AC133561.5-201ENST00000635547 218 ntBASIC17.73■□□□□ 0.43
RNF4P78317 CYP2D8P-201ENST00000433633 1490 ntBASIC17.73■□□□□ 0.43
RNF4P78317 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF4P78317 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF4P78317 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF4P78317 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF4P78317 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF4P78317 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF4P78317 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
RNF4P78317 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RNF4P78317 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 AC093484.2-201ENST00000580996 2166 ntBASIC17.72■□□□□ 0.43
RNF4P78317 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RNF4P78317 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
RNF4P78317 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF4P78317 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.72■□□□□ 0.43
RNF4P78317 C2orf69P3-201ENST00000565542 1120 ntBASIC17.72■□□□□ 0.43
RNF4P78317 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
RNF4P78317 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF4P78317 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF4P78317 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
RNF4P78317 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
RNF4P78317 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
RNF4P78317 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF4P78317 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.71■□□□□ 0.43
RNF4P78317 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF4P78317 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 TSPY23P-201ENST00000440136 739 ntBASIC17.71■□□□□ 0.43
RNF4P78317 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.71■□□□□ 0.43
RNF4P78317 LINC01023-201ENST00000606054 436 ntBASIC17.71■□□□□ 0.43
RNF4P78317 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 AC010947.1-201ENST00000623454 693 ntBASIC17.71■□□□□ 0.43
RNF4P78317 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.71■□□□□ 0.43
RNF4P78317 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
RNF4P78317 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF4P78317 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
RNF4P78317 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.71■□□□□ 0.43
RNF4P78317 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF4P78317 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF4P78317 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
RNF4P78317 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
RNF4P78317 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
RNF4P78317 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
RNF4P78317 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
RNF4P78317 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RNF4P78317 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RNF4P78317 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.7■□□□□ 0.42
RNF4P78317 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
RNF4P78317 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RNF4P78317 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RNF4P78317 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
RNF4P78317 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms