Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.46■■□□□ 1.03
TPM4P67936 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM4P67936 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
TPM4P67936 AC135050.7-201ENST00000624508 2218 ntBASIC21.45■■□□□ 1.03
TPM4P67936 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
TPM4P67936 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.45■■□□□ 1.02
TPM4P67936 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
TPM4P67936 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.45■■□□□ 1.02
TPM4P67936 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.45■■□□□ 1.02
TPM4P67936 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.45■■□□□ 1.02
TPM4P67936 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.02
TPM4P67936 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.45■■□□□ 1.02
TPM4P67936 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.45■■□□□ 1.02
TPM4P67936 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM4P67936 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.44■■□□□ 1.02
TPM4P67936 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.44■■□□□ 1.02
TPM4P67936 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.44■■□□□ 1.02
TPM4P67936 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
TPM4P67936 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
TPM4P67936 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.44■■□□□ 1.02
TPM4P67936 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.44■■□□□ 1.02
TPM4P67936 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.44■■□□□ 1.02
TPM4P67936 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
TPM4P67936 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.44■■□□□ 1.02
TPM4P67936 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.44■■□□□ 1.02
TPM4P67936 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
TPM4P67936 AC231657.2-201ENST00000624556 255 ntBASIC21.44■■□□□ 1.02
TPM4P67936 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TPM4P67936 KRT17P1-201ENST00000399211 1546 ntBASIC21.44■■□□□ 1.02
TPM4P67936 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
TPM4P67936 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
TPM4P67936 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 AL390719.1-204ENST00000412397 1219 ntBASIC21.43■■□□□ 1.02
TPM4P67936 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.43■■□□□ 1.02
TPM4P67936 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.43■■□□□ 1.02
TPM4P67936 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.43■■□□□ 1.02
TPM4P67936 AC011767.1-201ENST00000617410 1153 ntBASIC21.43■■□□□ 1.02
TPM4P67936 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
TPM4P67936 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
TPM4P67936 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC21.43■■□□□ 1.02
TPM4P67936 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.43■■□□□ 1.02
TPM4P67936 FP475955.4-201ENST00000623131 1990 ntBASIC21.43■■□□□ 1.02
TPM4P67936 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.43■■□□□ 1.02
TPM4P67936 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM4P67936 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
TPM4P67936 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM4P67936 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM4P67936 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM4P67936 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
TPM4P67936 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.42■■□□□ 1.02
TPM4P67936 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM4P67936 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TPM4P67936 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TPM4P67936 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.42■■□□□ 1.02
TPM4P67936 LSM12P1-201ENST00000411836 588 ntBASIC21.42■■□□□ 1.02
TPM4P67936 AC007322.1-201ENST00000426983 750 ntBASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms