Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL4A4P53420 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.54■□□□□ 0.88
COL4A4P53420 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
COL4A4P53420 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
COL4A4P53420 AC125437.2-201ENST00000625180 2167 ntBASIC20.53■□□□□ 0.88
COL4A4P53420 LINC01465-201ENST00000408887 1940 ntBASIC20.53■□□□□ 0.88
COL4A4P53420 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.53■□□□□ 0.88
COL4A4P53420 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.53■□□□□ 0.88
COL4A4P53420 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
COL4A4P53420 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 TSPY12P-201ENST00000421279 868 ntBASIC20.53■□□□□ 0.88
COL4A4P53420 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A4P53420 AL671883.3-201ENST00000603274 991 ntBASIC20.53■□□□□ 0.88
COL4A4P53420 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.53■□□□□ 0.88
COL4A4P53420 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
COL4A4P53420 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL4A4P53420 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A4P53420 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A4P53420 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.52■□□□□ 0.88
COL4A4P53420 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A4P53420 UNC93B7-201ENST00000509439 705 ntBASIC20.52■□□□□ 0.88
COL4A4P53420 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A4P53420 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.88
COL4A4P53420 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A4P53420 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A4P53420 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.52■□□□□ 0.88
COL4A4P53420 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.52■□□□□ 0.88
COL4A4P53420 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
COL4A4P53420 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
COL4A4P53420 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A4P53420 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A4P53420 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.52■□□□□ 0.88
COL4A4P53420 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A4P53420 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.51■□□□□ 0.87
COL4A4P53420 AC009078.2-202ENST00000463353 338 ntBASIC20.51■□□□□ 0.87
COL4A4P53420 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.51■□□□□ 0.87
COL4A4P53420 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A4P53420 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.51■□□□□ 0.87
COL4A4P53420 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL4A4P53420 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL4A4P53420 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL4A4P53420 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
COL4A4P53420 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.51■□□□□ 0.87
COL4A4P53420 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.51■□□□□ 0.87
COL4A4P53420 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.51■□□□□ 0.87
COL4A4P53420 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A4P53420 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.51■□□□□ 0.87
COL4A4P53420 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A4P53420 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL4A4P53420 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A4P53420 AC092329.2-201ENST00000598402 547 ntBASIC20.51■□□□□ 0.87
COL4A4P53420 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A4P53420 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.51■□□□□ 0.87
COL4A4P53420 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.5■□□□□ 0.87
COL4A4P53420 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A4P53420 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A4P53420 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A4P53420 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.5■□□□□ 0.87
COL4A4P53420 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL4A4P53420 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.5■□□□□ 0.87
COL4A4P53420 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
COL4A4P53420 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.5■□□□□ 0.87
COL4A4P53420 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
COL4A4P53420 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A4P53420 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL4A4P53420 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A4P53420 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
COL4A4P53420 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A4P53420 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A4P53420 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms