Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CLCN3P51790 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.08■□□□□ 0.97
CLCN3P51790 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.08■□□□□ 0.97
CLCN3P51790 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
CLCN3P51790 AC141257.4-201ENST00000634557 245 ntBASIC21.08■□□□□ 0.97
CLCN3P51790 AC136944.6-201ENST00000634818 245 ntBASIC21.08■□□□□ 0.97
CLCN3P51790 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLCN3P51790 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.08■□□□□ 0.96
CLCN3P51790 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.08■□□□□ 0.96
CLCN3P51790 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.08■□□□□ 0.96
CLCN3P51790 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLCN3P51790 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.08■□□□□ 0.96
CLCN3P51790 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.08■□□□□ 0.96
CLCN3P51790 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLCN3P51790 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CLCN3P51790 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLCN3P51790 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.07■□□□□ 0.96
CLCN3P51790 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.07■□□□□ 0.96
CLCN3P51790 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CLCN3P51790 KRT8P45-201ENST00000414328 1447 ntBASIC21.07■□□□□ 0.96
CLCN3P51790 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLCN3P51790 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.07■□□□□ 0.96
CLCN3P51790 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CLCN3P51790 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
CLCN3P51790 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.07■□□□□ 0.96
CLCN3P51790 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.07■□□□□ 0.96
CLCN3P51790 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CLCN3P51790 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.07■□□□□ 0.96
CLCN3P51790 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
CLCN3P51790 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
CLCN3P51790 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLCN3P51790 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.07■□□□□ 0.96
CLCN3P51790 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.07■□□□□ 0.96
CLCN3P51790 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CLCN3P51790 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.06■□□□□ 0.96
CLCN3P51790 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
CLCN3P51790 TSPY21P-201ENST00000433481 731 ntBASIC21.06■□□□□ 0.96
CLCN3P51790 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CLCN3P51790 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.06■□□□□ 0.96
CLCN3P51790 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CLCN3P51790 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.06■□□□□ 0.96
CLCN3P51790 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.06■□□□□ 0.96
CLCN3P51790 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CLCN3P51790 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.05■□□□□ 0.96
CLCN3P51790 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CLCN3P51790 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLCN3P51790 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLCN3P51790 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.05■□□□□ 0.96
CLCN3P51790 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CLCN3P51790 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLCN3P51790 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLCN3P51790 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.05■□□□□ 0.96
CLCN3P51790 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CLCN3P51790 YBX1P2-201ENST00000489612 999 ntBASIC21.05■□□□□ 0.96
CLCN3P51790 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CLCN3P51790 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.05■□□□□ 0.96
CLCN3P51790 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.05■□□□□ 0.96
CLCN3P51790 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CLCN3P51790 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLCN3P51790 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.04■□□□□ 0.96
CLCN3P51790 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.04■□□□□ 0.96
CLCN3P51790 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.04■□□□□ 0.96
CLCN3P51790 AL158211.5-201ENST00000623583 2518 ntBASIC21.04■□□□□ 0.96
CLCN3P51790 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CLCN3P51790 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.04■□□□□ 0.96
CLCN3P51790 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.04■□□□□ 0.96
CLCN3P51790 COX11P1-201ENST00000489116 835 ntBASIC21.04■□□□□ 0.96
CLCN3P51790 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 AC022616.7-201ENST00000525383 220 ntBASIC21.04■□□□□ 0.96
CLCN3P51790 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.04■□□□□ 0.96
CLCN3P51790 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.04■□□□□ 0.96
CLCN3P51790 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 MIR4674-201ENST00000582457 87 ntBASIC21.04■□□□□ 0.96
CLCN3P51790 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CLCN3P51790 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.04■□□□□ 0.96
CLCN3P51790 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.04■□□□□ 0.96
CLCN3P51790 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
CLCN3P51790 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CLCN3P51790 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CLCN3P51790 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.04■□□□□ 0.96
CLCN3P51790 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCN3P51790 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms