Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.57■□□□□ 0.56
HNF4AP41235 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.57■□□□□ 0.56
HNF4AP41235 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.57■□□□□ 0.56
HNF4AP41235 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.57■□□□□ 0.56
HNF4AP41235 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.57■□□□□ 0.56
HNF4AP41235 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HNF4AP41235 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.57■□□□□ 0.56
HNF4AP41235 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.57■□□□□ 0.56
HNF4AP41235 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.57■□□□□ 0.56
HNF4AP41235 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HNF4AP41235 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
HNF4AP41235 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HNF4AP41235 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.56■□□□□ 0.56
HNF4AP41235 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HNF4AP41235 AC020763.4-201ENST00000623414 4170 ntBASIC18.56■□□□□ 0.56
HNF4AP41235 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.56■□□□□ 0.56
HNF4AP41235 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.56■□□□□ 0.56
HNF4AP41235 KRT16P5-201ENST00000455284 522 ntBASIC18.56■□□□□ 0.56
HNF4AP41235 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.56■□□□□ 0.56
HNF4AP41235 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.56■□□□□ 0.56
HNF4AP41235 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HNF4AP41235 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
HNF4AP41235 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HNF4AP41235 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.55■□□□□ 0.56
HNF4AP41235 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.55■□□□□ 0.56
HNF4AP41235 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.55■□□□□ 0.56
HNF4AP41235 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.55■□□□□ 0.56
HNF4AP41235 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
HNF4AP41235 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HNF4AP41235 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.55■□□□□ 0.56
HNF4AP41235 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.55■□□□□ 0.56
HNF4AP41235 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.55■□□□□ 0.56
HNF4AP41235 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.55■□□□□ 0.56
HNF4AP41235 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.55■□□□□ 0.56
HNF4AP41235 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.55■□□□□ 0.56
HNF4AP41235 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.55■□□□□ 0.56
HNF4AP41235 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HNF4AP41235 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
HNF4AP41235 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.55■□□□□ 0.56
HNF4AP41235 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HNF4AP41235 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HNF4AP41235 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HNF4AP41235 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
HNF4AP41235 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
HNF4AP41235 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 HLA-A-209ENST00000638375 975 ntBASIC18.54■□□□□ 0.56
HNF4AP41235 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms