Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.33■□□□□ 0.36
SSX4O60224 AC105020.6-201ENST00000621523 1217 ntBASIC17.33■□□□□ 0.36
SSX4O60224 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.33■□□□□ 0.36
SSX4O60224 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.33■□□□□ 0.36
SSX4O60224 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.33■□□□□ 0.36
SSX4O60224 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.33■□□□□ 0.36
SSX4O60224 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SSX4O60224 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.32■□□□□ 0.36
SSX4O60224 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SSX4O60224 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 AC079598.2-202ENST00000546624 1451 ntBASIC17.32■□□□□ 0.36
SSX4O60224 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.32■□□□□ 0.36
SSX4O60224 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.32■□□□□ 0.36
SSX4O60224 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.32■□□□□ 0.36
SSX4O60224 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SSX4O60224 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
SSX4O60224 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.32■□□□□ 0.36
SSX4O60224 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
SSX4O60224 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.32■□□□□ 0.36
SSX4O60224 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.32■□□□□ 0.36
SSX4O60224 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.32■□□□□ 0.36
SSX4O60224 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.32■□□□□ 0.36
SSX4O60224 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SSX4O60224 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.31■□□□□ 0.36
SSX4O60224 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.31■□□□□ 0.36
SSX4O60224 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.31■□□□□ 0.36
SSX4O60224 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.31■□□□□ 0.36
SSX4O60224 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 MIR718-201ENST00000390190 70 ntBASIC17.31■□□□□ 0.36
SSX4O60224 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SSX4O60224 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.31■□□□□ 0.36
SSX4O60224 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.31■□□□□ 0.36
SSX4O60224 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.31■□□□□ 0.36
SSX4O60224 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.31■□□□□ 0.36
SSX4O60224 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SSX4O60224 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.31■□□□□ 0.36
SSX4O60224 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SSX4O60224 NOC2LP2-201ENST00000407594 1944 ntBASIC17.31■□□□□ 0.36
SSX4O60224 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.31■□□□□ 0.36
SSX4O60224 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.31■□□□□ 0.36
SSX4O60224 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SSX4O60224 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SSX4O60224 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.3■□□□□ 0.36
SSX4O60224 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.3■□□□□ 0.36
SSX4O60224 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.3■□□□□ 0.36
SSX4O60224 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SSX4O60224 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SSX4O60224 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSX4O60224 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.3■□□□□ 0.36
SSX4O60224 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SSX4O60224 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SSX4O60224 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSX4O60224 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSX4O60224 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.3■□□□□ 0.36
SSX4O60224 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SSX4O60224 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.3■□□□□ 0.36
SSX4O60224 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms