Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.51■□□□□ 0.87
FOXN3O00409 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.51■□□□□ 0.87
FOXN3O00409 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 Z85996.1-201ENST00000494644 937 ntBASIC20.51■□□□□ 0.87
FOXN3O00409 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
FOXN3O00409 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.51■□□□□ 0.87
FOXN3O00409 HTR7P1-201ENST00000538670 1336 ntBASIC20.51■□□□□ 0.87
FOXN3O00409 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.5■□□□□ 0.87
FOXN3O00409 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 TSPY23P-201ENST00000440136 739 ntBASIC20.5■□□□□ 0.87
FOXN3O00409 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.5■□□□□ 0.87
FOXN3O00409 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
FOXN3O00409 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.5■□□□□ 0.87
FOXN3O00409 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.5■□□□□ 0.87
FOXN3O00409 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
FOXN3O00409 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
FOXN3O00409 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXN3O00409 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
FOXN3O00409 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.49■□□□□ 0.87
FOXN3O00409 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.49■□□□□ 0.87
FOXN3O00409 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
FOXN3O00409 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 RPS2P4-201ENST00000476944 856 ntBASIC20.49■□□□□ 0.87
FOXN3O00409 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.49■□□□□ 0.87
FOXN3O00409 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.49■□□□□ 0.87
FOXN3O00409 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.49■□□□□ 0.87
FOXN3O00409 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.49■□□□□ 0.87
FOXN3O00409 AL445675.2-201ENST00000620291 557 ntBASIC20.49■□□□□ 0.87
FOXN3O00409 ITM2C-210ENST00000620962 501 ntBASIC20.49■□□□□ 0.87
FOXN3O00409 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.49■□□□□ 0.87
FOXN3O00409 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.49■□□□□ 0.87
FOXN3O00409 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.49■□□□□ 0.87
FOXN3O00409 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.49■□□□□ 0.87
FOXN3O00409 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.49■□□□□ 0.87
FOXN3O00409 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.49■□□□□ 0.87
FOXN3O00409 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.49■□□□□ 0.87
FOXN3O00409 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXN3O00409 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
FOXN3O00409 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
FOXN3O00409 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 NIFKP9-201ENST00000419265 221 ntBASIC20.48■□□□□ 0.87
FOXN3O00409 TSPY21P-201ENST00000433481 731 ntBASIC20.48■□□□□ 0.87
FOXN3O00409 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
FOXN3O00409 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.48■□□□□ 0.87
FOXN3O00409 AL359736.2-201ENST00000621992 437 ntBASIC20.48■□□□□ 0.87
FOXN3O00409 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.48■□□□□ 0.87
FOXN3O00409 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
FOXN3O00409 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXN3O00409 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
FOXN3O00409 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
FOXN3O00409 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
FOXN3O00409 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXN3O00409 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
FOXN3O00409 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
FOXN3O00409 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
FOXN3O00409 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
FOXN3O00409 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXN3O00409 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.47■□□□□ 0.87
FOXN3O00409 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXN3O00409 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXN3O00409 AL353708.3-201ENST00000610272 989 ntBASIC20.47■□□□□ 0.87
FOXN3O00409 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
FOXN3O00409 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
FOXN3O00409 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms