Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
SLC28A1O00337 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.45■□□□□ 0.54
SLC28A1O00337 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
SLC28A1O00337 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 POM121L13P-201ENST00000422362 380 ntBASIC18.45■□□□□ 0.54
SLC28A1O00337 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.45■□□□□ 0.54
SLC28A1O00337 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.45■□□□□ 0.54
SLC28A1O00337 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.45■□□□□ 0.54
SLC28A1O00337 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.45■□□□□ 0.54
SLC28A1O00337 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
SLC28A1O00337 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.45■□□□□ 0.54
SLC28A1O00337 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC28A1O00337 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.44■□□□□ 0.54
SLC28A1O00337 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SLC28A1O00337 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.44■□□□□ 0.54
SLC28A1O00337 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SLC28A1O00337 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.44■□□□□ 0.54
SLC28A1O00337 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SLC28A1O00337 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SLC28A1O00337 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.44■□□□□ 0.54
SLC28A1O00337 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
SLC28A1O00337 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.44■□□□□ 0.54
SLC28A1O00337 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 AL031598.1-201ENST00000561511 1773 ntBASIC18.44■□□□□ 0.54
SLC28A1O00337 Z98044.1-201ENST00000632503 1764 ntBASIC18.44■□□□□ 0.54
SLC28A1O00337 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC28A1O00337 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SLC28A1O00337 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.44■□□□□ 0.54
SLC28A1O00337 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.43■□□□□ 0.54
SLC28A1O00337 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.43■□□□□ 0.54
SLC28A1O00337 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.43■□□□□ 0.54
SLC28A1O00337 AC104771.1-201ENST00000603335 964 ntBASIC18.43■□□□□ 0.54
SLC28A1O00337 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.43■□□□□ 0.54
SLC28A1O00337 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SLC28A1O00337 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.43■□□□□ 0.54
SLC28A1O00337 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC28A1O00337 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SLC28A1O00337 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.42■□□□□ 0.54
SLC28A1O00337 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SLC28A1O00337 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.42■□□□□ 0.54
SLC28A1O00337 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.42■□□□□ 0.54
SLC28A1O00337 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SLC28A1O00337 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.42■□□□□ 0.54
SLC28A1O00337 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.42■□□□□ 0.54
SLC28A1O00337 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SLC28A1O00337 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.42■□□□□ 0.54
SLC28A1O00337 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
SLC28A1O00337 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SLC28A1O00337 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
SLC28A1O00337 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.42■□□□□ 0.54
SLC28A1O00337 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SLC28A1O00337 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SLC28A1O00337 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SLC28A1O00337 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.41■□□□□ 0.54
SLC28A1O00337 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SLC28A1O00337 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms