Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC087388.1-201ENST00000571370 1112 ntBASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 METTL23-204ENST00000586752 904 ntTSL 2 BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 KRT17P3-201ENST00000420566 1262 ntBASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 TEX21P-204ENST00000641479 1693 ntBASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC25.8■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AL355075.4-201ENST00000554988 638 ntBASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 NTF6B-201ENST00000591913 560 ntBASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC25.79■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC25.78■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC25.78■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms