Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VCX3AQ9NNX9 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.92■□□□□ 0.46
VCX3AQ9NNX9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.92■□□□□ 0.46
VCX3AQ9NNX9 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCX3AQ9NNX9 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCX3AQ9NNX9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 AL031598.1-201ENST00000561511 1773 ntBASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 POU5F1P4-201ENST00000413175 1085 ntBASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 AC008175.2-201ENST00000612840 297 ntBASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 MST1L-201ENST00000442552 2185 ntBASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 Z98044.1-201ENST00000632503 1764 ntBASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCX3AQ9NNX9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 AL513477.1-201ENST00000602865 2407 ntBASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 ESPNP-201ENST00000270691 2015 ntBASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 EEF1DP3-203ENST00000566025 782 ntBASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 AL138724.1-201ENST00000606771 1088 ntBASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 RARRES2P11-201ENST00000635158 484 ntBASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 AL161938.1-201ENST00000569833 2180 ntBASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VCX3AQ9NNX9 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
VCX3AQ9NNX9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
VCX3AQ9NNX9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
VCX3AQ9NNX9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
VCX3AQ9NNX9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
VCX3AQ9NNX9 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.89■□□□□ 0.46
VCX3AQ9NNX9 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms