Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 MIPEPP3-201ENST00000412105 444 ntBASIC20.69■□□□□ 0.9
CCDC42Q96M95 AC026185.1-201ENST00000445748 174 ntBASIC20.69■□□□□ 0.9
CCDC42Q96M95 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 MIR663A-201ENST00000385250 93 ntBASIC20.68■□□□□ 0.9
CCDC42Q96M95 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 AC092437.1-201ENST00000624794 1048 ntBASIC20.68■□□□□ 0.9
CCDC42Q96M95 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC42Q96M95 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC42Q96M95 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 AL121906.2-201ENST00000621597 723 ntBASIC20.67■□□□□ 0.9
CCDC42Q96M95 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC42Q96M95 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC42Q96M95 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 AC090164.3-201ENST00000610780 2143 ntBASIC20.66■□□□□ 0.9
CCDC42Q96M95 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC42Q96M95 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC42Q96M95 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
CCDC42Q96M95 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC42Q96M95 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms