Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 AL592293.1-201ENST00000502889 1188 ntBASIC12.01□□□□□ -0.49
LINC00643Q86TS7 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 MOB2-207ENST00000614710 705 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
LINC00643Q86TS7 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
LINC00643Q86TS7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC12□□□□□ -0.49
LINC00643Q86TS7 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
LINC00643Q86TS7 PCDH8P1-201ENST00000428983 2773 ntBASIC12□□□□□ -0.49
LINC00643Q86TS7 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC12□□□□□ -0.49
LINC00643Q86TS7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC12□□□□□ -0.49
LINC00643Q86TS7 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC12□□□□□ -0.49
LINC00643Q86TS7 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC12□□□□□ -0.49
LINC00643Q86TS7 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
LINC00643Q86TS7 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00643Q86TS7 FP475955.4-201ENST00000623131 1990 ntBASIC11.99□□□□□ -0.49
LINC00643Q86TS7 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 AC108860.2-201ENST00000562760 2183 ntBASIC11.99□□□□□ -0.49
LINC00643Q86TS7 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
LINC00643Q86TS7 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms