Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.73■□□□□ 0.91
KRT39Q6A163 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.73■□□□□ 0.91
KRT39Q6A163 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.73■□□□□ 0.91
KRT39Q6A163 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.73■□□□□ 0.91
KRT39Q6A163 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.73■□□□□ 0.91
KRT39Q6A163 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
KRT39Q6A163 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.73■□□□□ 0.91
KRT39Q6A163 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.73■□□□□ 0.91
KRT39Q6A163 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.73■□□□□ 0.91
KRT39Q6A163 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.73■□□□□ 0.91
KRT39Q6A163 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
KRT39Q6A163 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.72■□□□□ 0.91
KRT39Q6A163 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.72■□□□□ 0.91
KRT39Q6A163 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.72■□□□□ 0.91
KRT39Q6A163 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
KRT39Q6A163 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 RPS2P55-201ENST00000397318 883 ntBASIC20.72■□□□□ 0.91
KRT39Q6A163 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.72■□□□□ 0.91
KRT39Q6A163 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.72■□□□□ 0.91
KRT39Q6A163 AC107956.1-201ENST00000494359 873 ntBASIC20.72■□□□□ 0.91
KRT39Q6A163 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
KRT39Q6A163 AC026271.3-201ENST00000571884 352 ntBASIC20.72■□□□□ 0.91
KRT39Q6A163 AL031985.4-201ENST00000642138 673 ntBASIC20.72■□□□□ 0.91
KRT39Q6A163 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.72■□□□□ 0.91
KRT39Q6A163 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.72■□□□□ 0.91
KRT39Q6A163 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.72■□□□□ 0.91
KRT39Q6A163 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.72■□□□□ 0.91
KRT39Q6A163 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
KRT39Q6A163 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.72■□□□□ 0.91
KRT39Q6A163 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KRT39Q6A163 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.72■□□□□ 0.91
KRT39Q6A163 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 IRX1P1-201ENST00000438849 1838 ntBASIC20.71■□□□□ 0.91
KRT39Q6A163 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
KRT39Q6A163 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.71■□□□□ 0.91
KRT39Q6A163 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.71■□□□□ 0.91
KRT39Q6A163 AC012618.2-201ENST00000428058 849 ntBASIC20.71■□□□□ 0.91
KRT39Q6A163 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
KRT39Q6A163 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.71■□□□□ 0.91
KRT39Q6A163 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.71■□□□□ 0.91
KRT39Q6A163 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.71■□□□□ 0.91
KRT39Q6A163 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.71■□□□□ 0.91
KRT39Q6A163 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.71■□□□□ 0.91
KRT39Q6A163 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.71■□□□□ 0.91
KRT39Q6A163 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
KRT39Q6A163 AIRN-201ENST00000601203 4374 ntBASIC20.71■□□□□ 0.91
KRT39Q6A163 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT39Q6A163 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.91
KRT39Q6A163 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.7■□□□□ 0.91
KRT39Q6A163 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.7■□□□□ 0.91
KRT39Q6A163 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 FP475955.4-201ENST00000623131 1990 ntBASIC20.7■□□□□ 0.9
KRT39Q6A163 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 AP000974.1-201ENST00000623909 2387 ntBASIC20.7■□□□□ 0.9
KRT39Q6A163 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 AC233702.5-201ENST00000584107 538 ntBASIC20.7■□□□□ 0.9
KRT39Q6A163 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.7■□□□□ 0.9
KRT39Q6A163 AP001412.1-201ENST00000608405 714 ntBASIC20.7■□□□□ 0.9
KRT39Q6A163 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.7■□□□□ 0.9
KRT39Q6A163 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.7■□□□□ 0.9
KRT39Q6A163 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms