Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.3
SOX2P48431 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.89■□□□□ 0.3
SOX2P48431 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SOX2P48431 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
SOX2P48431 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX2P48431 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX2P48431 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.89■□□□□ 0.29
SOX2P48431 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC16.89■□□□□ 0.29
SOX2P48431 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX2P48431 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.89■□□□□ 0.29
SOX2P48431 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC16.89■□□□□ 0.29
SOX2P48431 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.89■□□□□ 0.29
SOX2P48431 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX2P48431 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SOX2P48431 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC16.89■□□□□ 0.29
SOX2P48431 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.89■□□□□ 0.29
SOX2P48431 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX2P48431 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
SOX2P48431 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
SOX2P48431 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX2P48431 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SOX2P48431 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SOX2P48431 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX2P48431 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SOX2P48431 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX2P48431 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SOX2P48431 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX2P48431 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
SOX2P48431 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SOX2P48431 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SOX2P48431 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SOX2P48431 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
SOX2P48431 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SOX2P48431 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX2P48431 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX2P48431 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX2P48431 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SOX2P48431 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
SOX2P48431 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX2P48431 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX2P48431 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SOX2P48431 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX2P48431 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX2P48431 WIZP1-201ENST00000531444 2299 ntBASIC16.87■□□□□ 0.29
SOX2P48431 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX2P48431 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SOX2P48431 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 ME3-201ENST00000323418 1068 ntTSL 5 BASIC16.87■□□□□ 0.29
SOX2P48431 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 AL512625.2-201ENST00000417533 625 ntBASIC16.87■□□□□ 0.29
SOX2P48431 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
SOX2P48431 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC16.87■□□□□ 0.29
SOX2P48431 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX2P48431 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX2P48431 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SOX2P48431 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX2P48431 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX2P48431 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SOX2P48431 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX2P48431 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX2P48431 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms