Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.76■□□□□ 0.27
COL8A1P27658 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
COL8A1P27658 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.75■□□□□ 0.27
COL8A1P27658 KRT18P1-202ENST00000452408 1331 ntBASIC16.75■□□□□ 0.27
COL8A1P27658 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
COL8A1P27658 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.75■□□□□ 0.27
COL8A1P27658 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.75■□□□□ 0.27
COL8A1P27658 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.75■□□□□ 0.27
COL8A1P27658 AC106795.1-205ENST00000512851 1056 ntBASIC16.75■□□□□ 0.27
COL8A1P27658 AC092865.5-201ENST00000545435 363 ntBASIC16.75■□□□□ 0.27
COL8A1P27658 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.75■□□□□ 0.27
COL8A1P27658 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
COL8A1P27658 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
COL8A1P27658 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.75■□□□□ 0.27
COL8A1P27658 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.75■□□□□ 0.27
COL8A1P27658 FBXW4P1-201ENST00000426721 2239 ntBASIC16.75■□□□□ 0.27
COL8A1P27658 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.75■□□□□ 0.27
COL8A1P27658 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.75■□□□□ 0.27
COL8A1P27658 AC121338.2-201ENST00000622535 1744 ntBASIC16.75■□□□□ 0.27
COL8A1P27658 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL8A1P27658 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.75■□□□□ 0.27
COL8A1P27658 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.75■□□□□ 0.27
COL8A1P27658 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL8A1P27658 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
COL8A1P27658 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.74■□□□□ 0.27
COL8A1P27658 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.74■□□□□ 0.27
COL8A1P27658 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.74■□□□□ 0.27
COL8A1P27658 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.74■□□□□ 0.27
COL8A1P27658 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 LINC01711-201ENST00000598340 967 ntBASIC16.74■□□□□ 0.27
COL8A1P27658 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.74■□□□□ 0.27
COL8A1P27658 AL121772.3-201ENST00000610840 674 ntBASIC16.74■□□□□ 0.27
COL8A1P27658 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.74■□□□□ 0.27
COL8A1P27658 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.74■□□□□ 0.27
COL8A1P27658 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.74■□□□□ 0.27
COL8A1P27658 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL8A1P27658 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 HLA-A-201ENST00000376802 1334 ntBASIC16.73■□□□□ 0.27
COL8A1P27658 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.73■□□□□ 0.27
COL8A1P27658 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL8A1P27658 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.73■□□□□ 0.27
COL8A1P27658 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.73■□□□□ 0.27
COL8A1P27658 MIR574-201ENST00000385209 96 ntBASIC16.73■□□□□ 0.27
COL8A1P27658 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.73■□□□□ 0.27
COL8A1P27658 AL662844.1-201ENST00000546340 181 ntBASIC16.73■□□□□ 0.27
COL8A1P27658 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.73■□□□□ 0.27
COL8A1P27658 BX640515.1-201ENST00000617215 977 ntBASIC16.73■□□□□ 0.27
COL8A1P27658 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.73■□□□□ 0.27
COL8A1P27658 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.73■□□□□ 0.27
COL8A1P27658 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.73■□□□□ 0.27
COL8A1P27658 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL8A1P27658 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.72■□□□□ 0.27
COL8A1P27658 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms