Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 LETM1P2-201ENST00000597330 2178 ntBASIC18.38■□□□□ 0.53
SEMA3DO95025 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.38■□□□□ 0.53
SEMA3DO95025 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.38■□□□□ 0.53
SEMA3DO95025 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.38■□□□□ 0.53
SEMA3DO95025 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SEMA3DO95025 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.38■□□□□ 0.53
SEMA3DO95025 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.38■□□□□ 0.53
SEMA3DO95025 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.38■□□□□ 0.53
SEMA3DO95025 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.38■□□□□ 0.53
SEMA3DO95025 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.37■□□□□ 0.53
SEMA3DO95025 LINC01465-201ENST00000408887 1940 ntBASIC18.37■□□□□ 0.53
SEMA3DO95025 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SEMA3DO95025 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.37■□□□□ 0.53
SEMA3DO95025 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.37■□□□□ 0.53
SEMA3DO95025 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SEMA3DO95025 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.37■□□□□ 0.53
SEMA3DO95025 AL160286.2-201ENST00000567150 934 ntBASIC18.37■□□□□ 0.53
SEMA3DO95025 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
SEMA3DO95025 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.37■□□□□ 0.53
SEMA3DO95025 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SEMA3DO95025 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SEMA3DO95025 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SEMA3DO95025 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.36■□□□□ 0.53
SEMA3DO95025 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SEMA3DO95025 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SEMA3DO95025 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.36■□□□□ 0.53
SEMA3DO95025 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.36■□□□□ 0.53
SEMA3DO95025 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.36■□□□□ 0.53
SEMA3DO95025 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.36■□□□□ 0.53
SEMA3DO95025 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.36■□□□□ 0.53
SEMA3DO95025 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.36■□□□□ 0.53
SEMA3DO95025 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SEMA3DO95025 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
SEMA3DO95025 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEMA3DO95025 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
SEMA3DO95025 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
SEMA3DO95025 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
SEMA3DO95025 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.35■□□□□ 0.53
SEMA3DO95025 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SEMA3DO95025 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.35■□□□□ 0.53
SEMA3DO95025 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SEMA3DO95025 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.35■□□□□ 0.53
SEMA3DO95025 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SEMA3DO95025 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
SEMA3DO95025 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.35■□□□□ 0.53
SEMA3DO95025 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.35■□□□□ 0.53
SEMA3DO95025 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.35■□□□□ 0.53
SEMA3DO95025 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.35■□□□□ 0.53
SEMA3DO95025 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEMA3DO95025 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SEMA3DO95025 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.34■□□□□ 0.53
SEMA3DO95025 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.34■□□□□ 0.53
SEMA3DO95025 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SEMA3DO95025 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SEMA3DO95025 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.34■□□□□ 0.53
SEMA3DO95025 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.34■□□□□ 0.53
SEMA3DO95025 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SEMA3DO95025 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SEMA3DO95025 FAM201B-201ENST00000458407 597 ntBASIC18.34■□□□□ 0.53
SEMA3DO95025 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.34■□□□□ 0.53
SEMA3DO95025 ITM2C-210ENST00000620962 501 ntBASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms