Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PRPF40AO75400 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PRPF40AO75400 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PRPF40AO75400 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PRPF40AO75400 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PRPF40AO75400 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
PRPF40AO75400 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PRPF40AO75400 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC22.31■■□□□ 1.16
PRPF40AO75400 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.31■■□□□ 1.16
PRPF40AO75400 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC22.31■■□□□ 1.16
PRPF40AO75400 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
PRPF40AO75400 AL354751.1-201ENST00000412768 1863 ntBASIC22.31■■□□□ 1.16
PRPF40AO75400 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.31■■□□□ 1.16
PRPF40AO75400 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
PRPF40AO75400 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC22.31■■□□□ 1.16
PRPF40AO75400 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 CYP2T1P-201ENST00000432607 1285 ntBASIC22.31■■□□□ 1.16
PRPF40AO75400 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC22.31■■□□□ 1.16
PRPF40AO75400 WT1-AS_3.1-201ENST00000613262 234 ntBASIC22.31■■□□□ 1.16
PRPF40AO75400 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC22.31■■□□□ 1.16
PRPF40AO75400 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PRPF40AO75400 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
PRPF40AO75400 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
PRPF40AO75400 FZD10-202ENST00000539839 3282 ntBASIC22.3■■□□□ 1.16
PRPF40AO75400 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC22.3■■□□□ 1.16
PRPF40AO75400 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
PRPF40AO75400 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC22.3■■□□□ 1.16
PRPF40AO75400 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
PRPF40AO75400 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.3■■□□□ 1.16
PRPF40AO75400 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PRPF40AO75400 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC22.3■■□□□ 1.16
PRPF40AO75400 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC22.3■■□□□ 1.16
PRPF40AO75400 OR10C1-204ENST00000622521 1039 ntBASIC22.3■■□□□ 1.16
PRPF40AO75400 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PRPF40AO75400 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC22.3■■□□□ 1.16
PRPF40AO75400 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
PRPF40AO75400 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.3■■□□□ 1.16
PRPF40AO75400 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC22.3■■□□□ 1.16
PRPF40AO75400 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PRPF40AO75400 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PRPF40AO75400 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
PRPF40AO75400 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
PRPF40AO75400 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC22.29■■□□□ 1.16
PRPF40AO75400 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
PRPF40AO75400 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
PRPF40AO75400 NCF1B-203ENST00000435988 1254 ntBASIC22.29■■□□□ 1.16
PRPF40AO75400 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC22.29■■□□□ 1.16
PRPF40AO75400 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC22.29■■□□□ 1.16
PRPF40AO75400 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
PRPF40AO75400 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
PRPF40AO75400 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PRPF40AO75400 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PRPF40AO75400 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC22.29■■□□□ 1.16
PRPF40AO75400 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PRPF40AO75400 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
PRPF40AO75400 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 SDHAP1-207ENST00000440850 2000 ntBASIC22.28■■□□□ 1.16
PRPF40AO75400 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC22.28■■□□□ 1.16
PRPF40AO75400 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC22.28■■□□□ 1.16
PRPF40AO75400 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC22.28■■□□□ 1.16
PRPF40AO75400 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC22.28■■□□□ 1.16
PRPF40AO75400 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC22.28■■□□□ 1.16
PRPF40AO75400 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 AC104771.1-201ENST00000603335 964 ntBASIC22.28■■□□□ 1.16
PRPF40AO75400 AL109923.1-201ENST00000618799 583 ntBASIC22.28■■□□□ 1.16
PRPF40AO75400 AL050303.2-201ENST00000619798 666 ntBASIC22.28■■□□□ 1.16
PRPF40AO75400 NOC2LP1-202ENST00000452600 2235 ntBASIC22.28■■□□□ 1.16
PRPF40AO75400 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC22.28■■□□□ 1.16
PRPF40AO75400 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
PRPF40AO75400 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
PRPF40AO75400 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC22.28■■□□□ 1.16
PRPF40AO75400 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PRPF40AO75400 EFTUD1P1-204ENST00000560401 1798 ntBASIC22.27■■□□□ 1.16
PRPF40AO75400 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
PRPF40AO75400 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms