Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 DUX4L26-201ENST00000489078 1255 ntBASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 SDHAP1-207ENST00000440850 2000 ntBASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 TSPY23P-201ENST00000440136 739 ntBASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 AP003041.3-201ENST00000527151 707 ntBASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 AL445228.2-201ENST00000605589 952 ntBASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
C1QTNF3-AMACRE9PGA6 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms