Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC61Q9Y6R9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC61Q9Y6R9 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 TCF3P1-201ENST00000423021 1937 ntBASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 AL121894.2-201ENST00000602977 491 ntBASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC61Q9Y6R9 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 SDHAP1-207ENST00000440850 2000 ntBASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 FGF14-AS2-201ENST00000606448 1074 ntBASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC61Q9Y6R9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 IPPK-202ENST00000375522 882 ntTSL 3 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 HCG4P8-203ENST00000443049 980 ntBASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 CNP-204ENST00000472031 1019 ntTSL 2 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC61Q9Y6R9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 WDR88-203ENST00000592765 651 ntTSL 5 BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC61Q9Y6R9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 HBZP1-201ENST00000354915 429 ntBASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
CCDC61Q9Y6R9 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms