Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL20A1Q9P218 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.79■■□□□ 1.08
COL20A1Q9P218 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
COL20A1Q9P218 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
COL20A1Q9P218 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL20A1Q9P218 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL20A1Q9P218 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL20A1Q9P218 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL20A1Q9P218 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL20A1Q9P218 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL20A1Q9P218 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL20A1Q9P218 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL20A1Q9P218 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.78■■□□□ 1.08
COL20A1Q9P218 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL20A1Q9P218 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 AK4P3-201ENST00000418260 669 ntBASIC21.77■■□□□ 1.08
COL20A1Q9P218 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 MIR4674-201ENST00000582457 87 ntBASIC21.77■■□□□ 1.08
COL20A1Q9P218 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.08
COL20A1Q9P218 AC141257.4-201ENST00000634557 245 ntBASIC21.77■■□□□ 1.08
COL20A1Q9P218 AC136944.6-201ENST00000634818 245 ntBASIC21.77■■□□□ 1.08
COL20A1Q9P218 KRT8P45-201ENST00000414328 1447 ntBASIC21.77■■□□□ 1.08
COL20A1Q9P218 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL20A1Q9P218 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL20A1Q9P218 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.77■■□□□ 1.07
COL20A1Q9P218 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.77■■□□□ 1.07
COL20A1Q9P218 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.77■■□□□ 1.07
COL20A1Q9P218 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL20A1Q9P218 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
COL20A1Q9P218 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL20A1Q9P218 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.76■■□□□ 1.07
COL20A1Q9P218 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL20A1Q9P218 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL20A1Q9P218 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.76■■□□□ 1.07
COL20A1Q9P218 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL20A1Q9P218 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.76■■□□□ 1.07
COL20A1Q9P218 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL20A1Q9P218 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL20A1Q9P218 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.76■■□□□ 1.07
COL20A1Q9P218 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL20A1Q9P218 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.76■■□□□ 1.07
COL20A1Q9P218 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.76■■□□□ 1.07
COL20A1Q9P218 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 Z82202.1-201ENST00000623446 1880 ntBASIC21.75■■□□□ 1.07
COL20A1Q9P218 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 YBX1P2-201ENST00000489612 999 ntBASIC21.75■■□□□ 1.07
COL20A1Q9P218 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
COL20A1Q9P218 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL20A1Q9P218 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.74■■□□□ 1.07
COL20A1Q9P218 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.74■■□□□ 1.07
COL20A1Q9P218 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL20A1Q9P218 AL158211.5-201ENST00000623583 2518 ntBASIC21.74■■□□□ 1.07
COL20A1Q9P218 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms