Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CISHQ9NSE2 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CISHQ9NSE2 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
CISHQ9NSE2 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.52■□□□□ 0.88
CISHQ9NSE2 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CISHQ9NSE2 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CISHQ9NSE2 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CISHQ9NSE2 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CISHQ9NSE2 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CISHQ9NSE2 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CISHQ9NSE2 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CISHQ9NSE2 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.52■□□□□ 0.88
CISHQ9NSE2 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.52■□□□□ 0.88
CISHQ9NSE2 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.52■□□□□ 0.88
CISHQ9NSE2 NUDT16P1-203ENST00000513809 620 ntBASIC20.52■□□□□ 0.88
CISHQ9NSE2 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.52■□□□□ 0.88
CISHQ9NSE2 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CISHQ9NSE2 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.52■□□□□ 0.88
CISHQ9NSE2 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CISHQ9NSE2 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CISHQ9NSE2 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CISHQ9NSE2 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.51■□□□□ 0.87
CISHQ9NSE2 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.51■□□□□ 0.87
CISHQ9NSE2 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
CISHQ9NSE2 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
CISHQ9NSE2 MESTP1-201ENST00000404287 994 ntBASIC20.51■□□□□ 0.87
CISHQ9NSE2 AC004951.3-201ENST00000418645 1148 ntBASIC20.51■□□□□ 0.87
CISHQ9NSE2 TSPY7P-201ENST00000431358 1114 ntBASIC20.51■□□□□ 0.87
CISHQ9NSE2 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 AC011506.1-201ENST00000474329 610 ntBASIC20.51■□□□□ 0.87
CISHQ9NSE2 AC091390.4-202ENST00000476426 537 ntBASIC20.51■□□□□ 0.87
CISHQ9NSE2 AC093827.2-201ENST00000512654 315 ntBASIC20.51■□□□□ 0.87
CISHQ9NSE2 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CISHQ9NSE2 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.51■□□□□ 0.87
CISHQ9NSE2 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.51■□□□□ 0.87
CISHQ9NSE2 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CISHQ9NSE2 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CISHQ9NSE2 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CISHQ9NSE2 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CISHQ9NSE2 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 AC008040.2-201ENST00000461049 708 ntBASIC20.5■□□□□ 0.87
CISHQ9NSE2 B3GAT3P1-201ENST00000471720 806 ntBASIC20.5■□□□□ 0.87
CISHQ9NSE2 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 MIR6786-201ENST00000616843 113 ntBASIC20.5■□□□□ 0.87
CISHQ9NSE2 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CISHQ9NSE2 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CISHQ9NSE2 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CISHQ9NSE2 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 SNORA78-201ENST00000459373 127 ntBASIC20.49■□□□□ 0.87
CISHQ9NSE2 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 AC026471.5-201ENST00000615068 467 ntBASIC20.49■□□□□ 0.87
CISHQ9NSE2 AC011298.2-201ENST00000617989 482 ntBASIC20.49■□□□□ 0.87
CISHQ9NSE2 AC130371.2-201ENST00000619443 611 ntBASIC20.49■□□□□ 0.87
CISHQ9NSE2 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CISHQ9NSE2 FSCN1P1-201ENST00000568912 1481 ntBASIC20.49■□□□□ 0.87
CISHQ9NSE2 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CISHQ9NSE2 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms