Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HINT3Q9NQE9 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HINT3Q9NQE9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HINT3Q9NQE9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HINT3Q9NQE9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HINT3Q9NQE9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HINT3Q9NQE9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.36■□□□□ 0.37
HINT3Q9NQE9 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HINT3Q9NQE9 AL031598.1-201ENST00000561511 1773 ntBASIC17.35■□□□□ 0.37
HINT3Q9NQE9 AC104417.2-201ENST00000562989 1793 ntBASIC17.35■□□□□ 0.37
HINT3Q9NQE9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 AL390719.1-204ENST00000412397 1219 ntBASIC17.35■□□□□ 0.37
HINT3Q9NQE9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 RNA5SP413-201ENST00000516373 109 ntBASIC17.35■□□□□ 0.37
HINT3Q9NQE9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 AC005829.2-201ENST00000571422 1056 ntBASIC17.35■□□□□ 0.37
HINT3Q9NQE9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HINT3Q9NQE9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 AC124283.5-201ENST00000624661 1809 ntBASIC17.34■□□□□ 0.37
HINT3Q9NQE9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HINT3Q9NQE9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
HINT3Q9NQE9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HINT3Q9NQE9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HINT3Q9NQE9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.33■□□□□ 0.37
HINT3Q9NQE9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.33■□□□□ 0.37
HINT3Q9NQE9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HINT3Q9NQE9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.33■□□□□ 0.37
HINT3Q9NQE9 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HINT3Q9NQE9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.33■□□□□ 0.37
HINT3Q9NQE9 AC093525.10-201ENST00000625130 1569 ntBASIC17.33■□□□□ 0.37
HINT3Q9NQE9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 WIZP1-201ENST00000531444 2299 ntBASIC17.33■□□□□ 0.36
HINT3Q9NQE9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HINT3Q9NQE9 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HINT3Q9NQE9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HINT3Q9NQE9 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HINT3Q9NQE9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HINT3Q9NQE9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HINT3Q9NQE9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms