Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 AC099343.3-201ENST00000605834 2503 ntBASIC19.05■□□□□ 0.64
VPS13AQ96RL7 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 AL353801.3-201ENST00000609898 542 ntBASIC19.05■□□□□ 0.64
VPS13AQ96RL7 AL773604.1-201ENST00000617417 272 ntBASIC19.05■□□□□ 0.64
VPS13AQ96RL7 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 TOB2P1-201ENST00000469761 992 ntBASIC19.04■□□□□ 0.64
VPS13AQ96RL7 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 DPP3P2-201ENST00000416030 1696 ntBASIC19.04■□□□□ 0.64
VPS13AQ96RL7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
VPS13AQ96RL7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 AC138894.3-201ENST00000603787 634 ntBASIC19.03■□□□□ 0.64
VPS13AQ96RL7 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 PHGDH-210ENST00000641115 1638 ntBASIC19.03■□□□□ 0.64
VPS13AQ96RL7 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 AP005901.3-202ENST00000581653 237 ntBASIC19.03■□□□□ 0.64
VPS13AQ96RL7 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.03■□□□□ 0.64
VPS13AQ96RL7 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 FEM1AP4-201ENST00000443167 1987 ntBASIC19.02■□□□□ 0.64
VPS13AQ96RL7 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 PMS2P2-201ENST00000425039 1128 ntBASIC19.02■□□□□ 0.64
VPS13AQ96RL7 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 AL035633.1-201ENST00000406139 838 ntBASIC19.02■□□□□ 0.64
VPS13AQ96RL7 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS13AQ96RL7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.02■□□□□ 0.63
VPS13AQ96RL7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS13AQ96RL7 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 AC093525.10-201ENST00000625130 1569 ntBASIC19.01■□□□□ 0.63
VPS13AQ96RL7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 PGAM5P1-201ENST00000518923 814 ntBASIC19.01■□□□□ 0.63
VPS13AQ96RL7 MIR4674-201ENST00000582457 87 ntBASIC19.01■□□□□ 0.63
VPS13AQ96RL7 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms