Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.83■□□□□ 0.93
LRCH3Q96II8 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRCH3Q96II8 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRCH3Q96II8 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.83■□□□□ 0.93
LRCH3Q96II8 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.83■□□□□ 0.93
LRCH3Q96II8 AP001005.1-201ENST00000571755 1248 ntBASIC20.83■□□□□ 0.93
LRCH3Q96II8 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
LRCH3Q96II8 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LRCH3Q96II8 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LRCH3Q96II8 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRCH3Q96II8 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 AC116351.2-201ENST00000606540 1585 ntBASIC20.82■□□□□ 0.92
LRCH3Q96II8 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRCH3Q96II8 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRCH3Q96II8 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRCH3Q96II8 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 AC012615.1-201ENST00000565797 1299 ntBASIC20.82■□□□□ 0.92
LRCH3Q96II8 AL353801.3-201ENST00000609898 542 ntBASIC20.82■□□□□ 0.92
LRCH3Q96II8 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 AC055717.3-201ENST00000622967 595 ntBASIC20.82■□□□□ 0.92
LRCH3Q96II8 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.82■□□□□ 0.92
LRCH3Q96II8 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRCH3Q96II8 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRCH3Q96II8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
LRCH3Q96II8 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRCH3Q96II8 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRCH3Q96II8 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.81■□□□□ 0.92
LRCH3Q96II8 SLC25A24-204ENST00000569674 2357 ntBASIC20.81■□□□□ 0.92
LRCH3Q96II8 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 MIR940-201ENST00000401276 94 ntBASIC20.81■□□□□ 0.92
LRCH3Q96II8 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.81■□□□□ 0.92
LRCH3Q96II8 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.81■□□□□ 0.92
LRCH3Q96II8 TERC-201ENST00000602385 541 ntBASIC20.81■□□□□ 0.92
LRCH3Q96II8 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.81■□□□□ 0.92
LRCH3Q96II8 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRCH3Q96II8 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 AC138894.3-201ENST00000603787 634 ntBASIC20.8■□□□□ 0.92
LRCH3Q96II8 AC140113.2-201ENST00000604370 208 ntBASIC20.8■□□□□ 0.92
LRCH3Q96II8 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRCH3Q96II8 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LRCH3Q96II8 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
LRCH3Q96II8 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRCH3Q96II8 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LRCH3Q96II8 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LRCH3Q96II8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.79■□□□□ 0.92
LRCH3Q96II8 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.79■□□□□ 0.92
LRCH3Q96II8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRCH3Q96II8 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRCH3Q96II8 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
LRCH3Q96II8 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.79■□□□□ 0.92
LRCH3Q96II8 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LRCH3Q96II8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRCH3Q96II8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.79■□□□□ 0.92
LRCH3Q96II8 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LRCH3Q96II8 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.79■□□□□ 0.92
LRCH3Q96II8 DRAXINP1-201ENST00000437611 948 ntBASIC20.79■□□□□ 0.92
LRCH3Q96II8 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms