Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC22.81■■□□□ 1.246e-7■■■■□ 20.3
UPF1Q92900 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.016e-7■■■■□ 20.3
UPF1Q92900 STARD3-205ENST00000471896 2129 ntTSL 220.3■□□□□ 0.846e-7■■■■□ 20.3
UPF1Q92900 STARD3-227ENST00000584850 2442 ntTSL 218.6■□□□□ 0.576e-7■■■■□ 20.3
UPF1Q92900 STARD3-208ENST00000488876 2404 ntTSL 217.31■□□□□ 0.366e-7■■■■□ 20.3
UPF1Q92900 STARD3-206ENST00000481171 3451 ntTSL 212.61□□□□□ -0.396e-7■■■■□ 20.3
UPF1Q92900 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.25■□□□□ 0.034e-10■■■■□ 20.3
UPF1Q92900 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.14e-10■■■■□ 20.3
UPF1Q92900 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC35.81■■■■□ 3.322e-6■■■■□ 20.3
UPF1Q92900 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC35.49■■■■□ 3.272e-6■■■■□ 20.3
UPF1Q92900 KCTD17-205ENST00000456470 1438 ntTSL 334.15■■■■□ 3.062e-6■■■■□ 20.3
UPF1Q92900 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.172e-6■■■■□ 20.3
UPF1Q92900 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.4■■□□□ 1.182e-6■■■■□ 20.3
UPF1Q92900 DDA1-201ENST00000359866 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.492e-7■■■■□ 20.2
UPF1Q92900 RNF130-204ENST00000520911 1790 ntTSL 1 (best)36.22■■■■□ 3.392e-6■■■■□ 20.2
UPF1Q92900 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC34.19■■■■□ 3.062e-6■■■■□ 20.2
UPF1Q92900 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC27.57■■■□□ 23e-10■■■■□ 20.2
UPF1Q92900 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.992e-6■■■■□ 20.2
UPF1Q92900 AC073896.1-203ENST00000548360 512 ntTSL 426.69■■□□□ 1.863e-10■■■■□ 20.2
UPF1Q92900 AC073896.1-202ENST00000547423 566 ntTSL 426.3■■□□□ 1.83e-10■■■■□ 20.2
UPF1Q92900 RALGAPA2-206ENST00000620717 1432 ntTSL 5 BASIC15.98■□□□□ 0.153e-10■■■■□ 20.2
UPF1Q92900 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.135e-7■■■■□ 20.2
UPF1Q92900 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.59□□□□□ -0.075e-7■■■■□ 20.2
UPF1Q92900 BOK-202ENST00000641230 183 nt14.52□□□□□ -0.093e-10■■■■□ 20.2
UPF1Q92900 TPCN1-204ENST00000541517 5173 ntTSL 5 BASIC11.98□□□□□ -0.495e-7■■■■□ 20.2
UPF1Q92900 RALGAPA2-204ENST00000430436 8769 ntTSL 59.21□□□□□ -0.933e-10■■■■□ 20.2
UPF1Q92900 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.383e-10■■■■□ 20.2
UPF1Q92900 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.272e-6■■■■□ 20.2
UPF1Q92900 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.163e-6■■■■□ 20.2
UPF1Q92900 EFNA1-205ENST00000497282 719 ntTSL 210.89□□□□□ -0.676e-35■■■■□ 20.2
UPF1Q92900 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.38■□□□□ 0.373e-7■■■■□ 20.2
UPF1Q92900 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.293e-7■■■■□ 20.2
UPF1Q92900 STRN-201ENST00000263918 8168 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.61e-8■■■■□ 20.2
UPF1Q92900 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.352e-8■■■■□ 20.2
UPF1Q92900 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.1■□□□□ 0.812e-8■■■■□ 20.2
UPF1Q92900 GABARAPL1-210ENST00000541960 3214 ntTSL 319.91■□□□□ 0.782e-8■■■■□ 20.2
UPF1Q92900 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.9■□□□□ 0.32e-8■■■■□ 20.2
UPF1Q92900 GABARAPL1-208ENST00000540424 2321 ntTSL 216.7■□□□□ 0.262e-8■■■■□ 20.2
UPF1Q92900 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.352e-7■■■■□ 20.2
UPF1Q92900 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.392e-7■■■■□ 20.2
UPF1Q92900 PSPN-202ENST00000597721 3911 ntBASIC10.87□□□□□ -0.674e-6■■■■□ 20.2
UPF1Q92900 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.546e-8■■■■□ 20.2
UPF1Q92900 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.071e-7■■■■□ 20.2
UPF1Q92900 DNAJC5-202ENST00000470551 5287 ntTSL 214.15□□□□□ -0.141e-7■■■■□ 20.2
UPF1Q92900 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.42e-6■■■■□ 20.2
UPF1Q92900 LMF2-203ENST00000504717 1233 ntTSL 537.49■■■■□ 3.592e-13■■■■□ 20.1
UPF1Q92900 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.454e-6■■■■□ 20.1
UPF1Q92900 PROSER2-AS1-201ENST00000445498 3146 ntTSL 2 BASIC14.89□□□□□ -0.032e-7■■■■□ 20.1
UPF1Q92900 YWHAB-201ENST00000353703 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.381e-8■■■■□ 20.1
UPF1Q92900 YWHAB-202ENST00000372839 3109 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.491e-8■■■■□ 20.1
UPF1Q92900 B4GALT2-207ENST00000497866 980 ntTSL 240.07■■■■■ 4.015e-12■■■■□ 20.1
UPF1Q92900 B4GALT2-208ENST00000498543 360 ntTSL 325.96■■□□□ 1.755e-12■■■■□ 20.1
UPF1Q92900 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.179e-7■■■■□ 20.1
UPF1Q92900 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.062e-6■■■■□ 20.1
UPF1Q92900 DBF4B-201ENST00000315005 2997 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.92e-6■■■■□ 20.1
UPF1Q92900 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.36□□□□□ -0.275e-8■■■■□ 20.1
UPF1Q92900 CLCN6-202ENST00000346436 5583 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.65e-8■■■■□ 20.1
UPF1Q92900 BCAT1-201ENST00000261192 9674 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.654e-14■■■■□ 20.1
UPF1Q92900 TMEM245-202ENST00000413712 1973 ntTSL 210.1□□□□□ -0.793e-7■■■■□ 20.1
UPF1Q92900 TMEM245-205ENST00000491854 2435 ntTSL 27.66□□□□□ -1.183e-7■■■■□ 20.1
UPF1Q92900 CANX-207ENST00000503303 345 ntTSL 511.73□□□□□ -0.538e-37■■■■□ 20.1
UPF1Q92900 NPLOC4-207ENST00000572346 567 ntTSL 422.1■■□□□ 1.131e-7■■■■□ 20.1
UPF1Q92900 NPLOC4-213ENST00000573519 654 ntTSL 1 (best)18.18■□□□□ 0.51e-7■■■■□ 20.1
UPF1Q92900 NPLOC4-214ENST00000573876 560 ntTSL 4 BASIC17.04■□□□□ 0.321e-7■■■■□ 20.1
UPF1Q92900 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.353e-10■■■■□ 20.1
UPF1Q92900 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.233e-10■■■■□ 20.1
UPF1Q92900 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.023e-10■■■■□ 20.1
UPF1Q92900 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 01e-9■■■■□ 20.1
UPF1Q92900 FUT6-203ENST00000524754 2598 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.151e-9■■■■□ 20.1
UPF1Q92900 FUT6-202ENST00000318336 3137 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.481e-9■■■■□ 20.1
UPF1Q92900 FUT6-201ENST00000286955 2847 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.51e-9■■■■□ 20.1
UPF1Q92900 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC20.5■□□□□ 0.871e-14■■■■□ 20.1
UPF1Q92900 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC18.87■□□□□ 0.611e-14■■■■□ 20.1
UPF1Q92900 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC33.61■■■□□ 2.971e-8■■■■□ 20.1
UPF1Q92900 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC32.61■■■□□ 2.811e-8■■■■□ 20.1
UPF1Q92900 GUCD1-212ENST00000493099 510 ntTSL 223.33■■□□□ 1.331e-8■■■■□ 20.1
UPF1Q92900 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.141e-8■■■■□ 20.1
UPF1Q92900 MORN1-206ENST00000469374 1907 ntTSL 517.23■□□□□ 0.351e-8■■■■□ 20.1
UPF1Q92900 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.56□□□□□ -1.25e-7■■■■□ 20.1
UPF1Q92900 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.475e-6■■■■□ 20.1
UPF1Q92900 SELENOW-213ENST00000601419 717 ntTSL 223.4■■□□□ 1.342e-8■■■■□ 20
UPF1Q92900 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC22.07■■□□□ 1.122e-8■■■■□ 20
UPF1Q92900 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC20.52■□□□□ 0.882e-8■■■■□ 20
UPF1Q92900 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.722e-8■■■■□ 20
UPF1Q92900 SELENOW-206ENST00000598273 2437 ntTSL 218.64■□□□□ 0.582e-8■■■■□ 20
UPF1Q92900 SELENOW-207ENST00000598956 1032 ntTSL 217.77■□□□□ 0.442e-8■■■■□ 20
UPF1Q92900 SELENOW-214ENST00000601937 674 ntTSL 213□□□□□ -0.332e-8■■■■□ 20
UPF1Q92900 SELENOW-215ENST00000602163 2503 nt12.06□□□□□ -0.482e-8■■■■□ 20
UPF1Q92900 MAZ-207ENST00000563012 646 ntTSL 328.91■■■□□ 2.223e-57■■■■□ 20
UPF1Q92900 TMEM214-202ENST00000321326 2700 ntTSL 221.74■■□□□ 1.073e-12■■■■□ 20
UPF1Q92900 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.53■■□□□ 1.043e-12■■■■□ 20
UPF1Q92900 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.63e-12■■■■□ 20
UPF1Q92900 TMEM214-208ENST00000460665 1967 ntTSL 216.98■□□□□ 0.313e-12■■■■□ 20
UPF1Q92900 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC16.02■□□□□ 0.161e-6■■■■□ 20
UPF1Q92900 EPS8L2-227ENST00000534449 491 ntTSL 330.59■■■□□ 2.493e-9■■■■□ 20
UPF1Q92900 EPS8L2-211ENST00000527832 1597 ntTSL 228.72■■■□□ 2.193e-9■■■■□ 20
UPF1Q92900 EPS8L2-204ENST00000524973 403 ntTSL 224.21■■□□□ 1.473e-9■■■■□ 20
UPF1Q92900 EPS8L2-220ENST00000531393 2304 ntTSL 1 (best)21.29■■□□□ 13e-9■■■■□ 20
UPF1Q92900 EPS8L2-212ENST00000528770 2233 ntTSL 219.16■□□□□ 0.663e-9■■■■□ 20
UPF1Q92900 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.193e-9■■■■□ 20
Retrieved 100 of 15,879 protein–RNA pairs in 150.4 ms