Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 CAT-201ENST00000241052 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.036e-8■□□□□ 9.8
U2AF1Q01081 SUN1-206ENST00000413171 4488 ntTSL 514.66□□□□□ -0.066e-8■□□□□ 9.8
U2AF1Q01081 SUN1-230ENST00000477950 575 ntTSL 314.54□□□□□ -0.086e-8■□□□□ 9.8
U2AF1Q01081 TLK1-201ENST00000359766 4321 ntTSL 514.2□□□□□ -0.148e-9■□□□□ 9.8
U2AF1Q01081 THOC2-211ENST00000459945 689 ntTSL 213.73□□□□□ -0.215e-6■□□□□ 9.8
U2AF1Q01081 HBP1-210ENST00000479011 601 ntTSL 213.47□□□□□ -0.255e-6■□□□□ 9.8
U2AF1Q01081 SUN1-202ENST00000389574 3812 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.286e-8■□□□□ 9.8
U2AF1Q01081 HUWE1-206ENST00000463852 586 ntTSL 213.18□□□□□ -0.38e-9■□□□□ 9.8
U2AF1Q01081 RIMKLB-212ENST00000544257 1589 ntTSL 1 (best)12.91□□□□□ -0.346e-8■□□□□ 9.8
U2AF1Q01081 HUWE1-202ENST00000262854 14739 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.368e-9■□□□□ 9.8
U2AF1Q01081 PPP2R2A-207ENST00000518397 830 ntTSL 512.77□□□□□ -0.375e-6■□□□□ 9.8
U2AF1Q01081 SUN1-210ENST00000425407 3868 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.396e-8■□□□□ 9.8
U2AF1Q01081 SUN1-205ENST00000405266 4062 ntTSL 5 BASIC12.59□□□□□ -0.396e-8■□□□□ 9.8
U2AF1Q01081 KANSL1-217ENST00000638269 3365 ntTSL 512.58□□□□□ -0.45e-6■□□□□ 9.8
U2AF1Q01081 THOC2-207ENST00000438358 1137 ntTSL 512.37□□□□□ -0.435e-6■□□□□ 9.8
U2AF1Q01081 SUN1-203ENST00000401592 3953 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.476e-8■□□□□ 9.8
U2AF1Q01081 MAN2A2-219ENST00000560147 492 ntTSL 412.03□□□□□ -0.485e-6■□□□□ 9.8
U2AF1Q01081 PPP2R2A-202ENST00000380737 3940 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.545e-6■□□□□ 9.8
U2AF1Q01081 HUWE1-204ENST00000426907 4805 ntTSL 511.54□□□□□ -0.568e-9■□□□□ 9.8
U2AF1Q01081 SUN1-219ENST00000452783 3717 ntTSL 2 BASIC11.36□□□□□ -0.596e-8■□□□□ 9.8
U2AF1Q01081 HUWE1-207ENST00000468322 729 ntTSL 211.33□□□□□ -0.68e-9■□□□□ 9.8
U2AF1Q01081 PRRC2A-210ENST00000483470 916 ntTSL 210.9□□□□□ -0.666e-8■□□□□ 9.8
U2AF1Q01081 DYNC1LI1-205ENST00000472985 646 ntTSL 39□□□□□ -0.978e-9■□□□□ 9.8
U2AF1Q01081 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.078e-9■□□□□ 9.8
U2AF1Q01081 HBP1-209ENST00000478930 563 ntTSL 48.1□□□□□ -1.115e-6■□□□□ 9.8
U2AF1Q01081 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.126e-8■□□□□ 9.8
U2AF1Q01081 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC6.34□□□□□ -1.398e-9■□□□□ 9.8
U2AF1Q01081 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.14□□□□□ -1.438e-9■□□□□ 9.8
U2AF1Q01081 GPCPD1-207ENST00000633552 571 ntTSL 55.73□□□□□ -1.496e-8■□□□□ 9.8
U2AF1Q01081 GPCPD1-202ENST00000418646 4015 ntTSL 55.61□□□□□ -1.516e-8■□□□□ 9.8
U2AF1Q01081 HBP1-205ENST00000464009 478 ntTSL 55.22□□□□□ -1.575e-6■□□□□ 9.8
U2AF1Q01081 KANSL1-213ENST00000576248 452 ntTSL 35.22□□□□□ -1.575e-6■□□□□ 9.8
U2AF1Q01081 SUN1-228ENST00000471349 569 ntTSL 44.73□□□□□ -1.656e-8■□□□□ 9.8
U2AF1Q01081 GPCPD1-204ENST00000473797 342 ntTSL 54.37□□□□□ -1.716e-8■□□□□ 9.8
U2AF1Q01081 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.15□□□□□ -1.918e-9■□□□□ 9.8
U2AF1Q01081 MARS-211ENST00000548202 796 ntTSL 220.85■□□□□ 0.932e-7■□□□□ 9.8
U2AF1Q01081 CFB-273ENST00000460718 768 ntTSL 515.27■□□□□ 0.042e-7■□□□□ 9.8
U2AF1Q01081 GIGYF2-209ENST00000423659 2329 ntTSL 515.15■□□□□ 0.022e-7■□□□□ 9.8
U2AF1Q01081 GIGYF2-202ENST00000409196 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.312e-7■□□□□ 9.8
U2AF1Q01081 GIGYF2-203ENST00000409451 5937 ntTSL 1 (best) BASIC11.79□□□□□ -0.522e-7■□□□□ 9.8
U2AF1Q01081 GIGYF2-204ENST00000409480 5976 ntTSL 5 BASIC11.76□□□□□ -0.532e-7■□□□□ 9.8
U2AF1Q01081 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC11.49□□□□□ -0.572e-7■□□□□ 9.8
U2AF1Q01081 GIGYF2-220ENST00000440945 2658 ntTSL 1 (best)11.4□□□□□ -0.582e-7■□□□□ 9.8
U2AF1Q01081 GIGYF2-201ENST00000373563 5847 ntTSL 1 (best) BASIC10.68□□□□□ -0.72e-7■□□□□ 9.8
U2AF1Q01081 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC7.45□□□□□ -1.222e-7■□□□□ 9.8
U2AF1Q01081 GIGYF2-237ENST00000482952 618 ntTSL 27.39□□□□□ -1.232e-7■□□□□ 9.8
U2AF1Q01081 MARS-224ENST00000551805 479 ntTSL 24.99□□□□□ -1.612e-7■□□□□ 9.8
U2AF1Q01081 TFRC-204ENST00000421258 524 ntTSL 317.15■□□□□ 0.342e-13■□□□□ 9.8
U2AF1Q01081 TFRC-208ENST00000464011 546 ntTSL 413.69□□□□□ -0.222e-13■□□□□ 9.8
U2AF1Q01081 ZNF714-206ENST00000613286 2696 ntTSL 1 (best)14.69□□□□□ -0.067e-9■□□□□ 9.8
U2AF1Q01081 ZNF714-205ENST00000610902 2671 ntTSL 213.31□□□□□ -0.287e-9■□□□□ 9.8
U2AF1Q01081 ZNF714-203ENST00000596053 800 ntTSL 2 BASIC10.52□□□□□ -0.737e-9■□□□□ 9.8
U2AF1Q01081 MIR20A-201ENST00000362279 71 ntBASIC-0.22□□□□□ -2.444e-6■□□□□ 9.8
U2AF1Q01081 PAH-218ENST00000635528 960 ntTSL 35.72□□□□□ -1.491e-6■□□□□ 9.8
U2AF1Q01081 PSME2-203ENST00000558273 1502 ntTSL 220.78■□□□□ 0.927e-7■□□□□ 9.8
U2AF1Q01081 PSME2-204ENST00000558931 2754 ntTSL 518.7■□□□□ 0.587e-7■□□□□ 9.8
U2AF1Q01081 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.487e-7■□□□□ 9.8
U2AF1Q01081 NUP188-208ENST00000491502 534 ntTSL 317.75■□□□□ 0.432e-6■□□□□ 9.8
U2AF1Q01081 NUP188-205ENST00000477069 2941 ntTSL 1 (best)15.02□□□□□ -0.012e-6■□□□□ 9.8
U2AF1Q01081 NUP188-201ENST00000372577 5689 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.272e-6■□□□□ 9.8
U2AF1Q01081 FARP1-221ENST00000597596 439 ntTSL 38.18□□□□□ -1.19e-13■□□□□ 9.8
U2AF1Q01081 STAT5B-203ENST00000468312 1799 ntTSL 1 (best)30.58■■■□□ 2.497e-7■□□□□ 9.7
U2AF1Q01081 SFSWAP-204ENST00000535399 778 ntTSL 230.43■■■□□ 2.464e-8■□□□□ 9.7
U2AF1Q01081 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC28.36■■■□□ 2.137e-7■□□□□ 9.7
U2AF1Q01081 STRBP-203ENST00000407982 2751 ntTSL 1 (best)26.24■■□□□ 1.797e-7■□□□□ 9.7
U2AF1Q01081 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.477e-7■□□□□ 9.7
U2AF1Q01081 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.097e-7■□□□□ 9.7
U2AF1Q01081 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.047e-7■□□□□ 9.7
U2AF1Q01081 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.887e-7■□□□□ 9.7
U2AF1Q01081 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.817e-7■□□□□ 9.7
U2AF1Q01081 KEL-204ENST00000467543 786 ntTSL 416.46■□□□□ 0.237e-7■□□□□ 9.7
U2AF1Q01081 KEL-202ENST00000460479 556 ntTSL 415.48■□□□□ 0.077e-7■□□□□ 9.7
U2AF1Q01081 RBM25-205ENST00000527432 3375 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.577e-7■□□□□ 9.7
U2AF1Q01081 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.797e-7■□□□□ 9.7
U2AF1Q01081 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC9.16□□□□□ -0.947e-7■□□□□ 9.7
U2AF1Q01081 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.967e-7■□□□□ 9.7
U2AF1Q01081 STAT5B-202ENST00000415845 559 ntTSL 48.97□□□□□ -0.977e-7■□□□□ 9.7
U2AF1Q01081 RBM25-212ENST00000532683 6848 ntTSL 1 (best)7.83□□□□□ -1.167e-7■□□□□ 9.7
U2AF1Q01081 RBM25-207ENST00000528081 3008 ntTSL 27.75□□□□□ -1.177e-7■□□□□ 9.7
U2AF1Q01081 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.27e-7■□□□□ 9.7
U2AF1Q01081 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.83□□□□□ -1.327e-7■□□□□ 9.7
U2AF1Q01081 DDB1-223ENST00000543658 571 ntTSL 415.84■□□□□ 0.132e-7■□□□□ 9.7
U2AF1Q01081 RBM39-230ENST00000476806 754 ntTSL 510.2□□□□□ -0.783e-7■□□□□ 9.7
U2AF1Q01081 RBM39-233ENST00000482563 1737 ntTSL 29□□□□□ -0.973e-7■□□□□ 9.7
U2AF1Q01081 RBM39-225ENST00000465158 825 ntTSL 28.81□□□□□ -13e-7■□□□□ 9.7
U2AF1Q01081 RBM39-237ENST00000492779 2316 ntTSL 28.41□□□□□ -1.063e-7■□□□□ 9.7
U2AF1Q01081 RBM39-241ENST00000496183 632 ntTSL 25.96□□□□□ -1.463e-7■□□□□ 9.7
U2AF1Q01081 RBM39-240ENST00000495293 759 ntTSL 25.87□□□□□ -1.473e-7■□□□□ 9.7
U2AF1Q01081 RBM39-217ENST00000448303 1008 ntTSL 55.71□□□□□ -1.53e-7■□□□□ 9.7
U2AF1Q01081 RBM39-221ENST00000461283 2415 ntTSL 53.5□□□□□ -1.853e-7■□□□□ 9.7
U2AF1Q01081 TRIP12-215ENST00000479037 2938 ntTSL 1 (best)16.74■□□□□ 0.273e-7■□□□□ 9.7
U2AF1Q01081 HSP90AB1-201ENST00000353801 2582 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.54e-13■□□□□ 9.7
U2AF1Q01081 HSP90AB1-203ENST00000371646 2572 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.54e-13■□□□□ 9.7
U2AF1Q01081 HSP90AB1-204ENST00000620073 2644 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.544e-13■□□□□ 9.7
U2AF1Q01081 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.332e-6■□□□□ 9.7
U2AF1Q01081 PRPF38A-202ENST00000474048 1059 ntTSL 1 (best)13.63□□□□□ -0.232e-6■□□□□ 9.7
U2AF1Q01081 PRPF38A-203ENST00000487160 926 ntTSL 26.47□□□□□ -1.372e-6■□□□□ 9.7
U2AF1Q01081 LSM14B-202ENST00000279069 811 ntTSL 336.97■■■■□ 3.512e-7■□□□□ 9.7
U2AF1Q01081 LSM14B-205ENST00000400318 1073 ntTSL 1 (best)35.17■■■■□ 3.222e-7■□□□□ 9.7
U2AF1Q01081 LSM14B-203ENST00000361670 1239 ntTSL 531.08■■■□□ 2.572e-7■□□□□ 9.7
Retrieved 100 of 10,096 protein–RNA pairs in 83.3 ms