Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 UPF3AP3-201ENST00000420996 769 ntBASIC13.95□□□□□ -0.18
PRKDCP78527 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC13.95□□□□□ -0.18
PRKDCP78527 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.95□□□□□ -0.18
PRKDCP78527 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
PRKDCP78527 AC239800.4-201ENST00000603712 296 ntBASIC13.95□□□□□ -0.18
PRKDCP78527 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
PRKDCP78527 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC13.95□□□□□ -0.18
PRKDCP78527 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC13.95□□□□□ -0.18
PRKDCP78527 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
PRKDCP78527 DDT-203ENST00000403754 569 ntTSL 3 BASIC13.94□□□□□ -0.18
PRKDCP78527 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.94□□□□□ -0.18
PRKDCP78527 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC13.94□□□□□ -0.18
PRKDCP78527 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
PRKDCP78527 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC13.94□□□□□ -0.18
PRKDCP78527 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.94□□□□□ -0.18
PRKDCP78527 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.94□□□□□ -0.18
PRKDCP78527 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC13.94□□□□□ -0.18
PRKDCP78527 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PRKDCP78527 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
PRKDCP78527 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
PRKDCP78527 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC13.94□□□□□ -0.18
PRKDCP78527 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PRKDCP78527 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.93□□□□□ -0.18
PRKDCP78527 LHX6-205ENST00000464484 666 ntTSL 2 BASIC13.93□□□□□ -0.18
PRKDCP78527 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
PRKDCP78527 TUB-203ENST00000534099 1759 ntTSL 2 BASIC13.93□□□□□ -0.18
PRKDCP78527 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC13.93□□□□□ -0.18
PRKDCP78527 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC13.93□□□□□ -0.18
PRKDCP78527 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
PRKDCP78527 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.93□□□□□ -0.18
PRKDCP78527 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.93□□□□□ -0.18
PRKDCP78527 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13.93□□□□□ -0.18
PRKDCP78527 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC13.93□□□□□ -0.18
PRKDCP78527 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
PRKDCP78527 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 AP006288.1-201ENST00000446065 395 ntBASIC13.93□□□□□ -0.18
PRKDCP78527 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC13.93□□□□□ -0.18
PRKDCP78527 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PRKDCP78527 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
PRKDCP78527 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
PRKDCP78527 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.92□□□□□ -0.18
PRKDCP78527 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.92□□□□□ -0.18
PRKDCP78527 FAM215A-202ENST00000632077 792 ntBASIC13.92□□□□□ -0.18
PRKDCP78527 AL391807.1-203ENST00000604392 2365 ntBASIC13.92□□□□□ -0.18
PRKDCP78527 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
PRKDCP78527 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13.92□□□□□ -0.18
PRKDCP78527 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13.92□□□□□ -0.18
PRKDCP78527 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC13.92□□□□□ -0.18
PRKDCP78527 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.92□□□□□ -0.18
PRKDCP78527 NAA38-203ENST00000575071 553 ntTSL 2 BASIC13.92□□□□□ -0.18
PRKDCP78527 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC13.92□□□□□ -0.18
PRKDCP78527 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.92□□□□□ -0.18
PRKDCP78527 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC13.92□□□□□ -0.18
PRKDCP78527 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
PRKDCP78527 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC13.92□□□□□ -0.18
PRKDCP78527 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC13.92□□□□□ -0.18
PRKDCP78527 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
PRKDCP78527 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.92□□□□□ -0.18
PRKDCP78527 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.92□□□□□ -0.18
PRKDCP78527 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms