Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC4P56524 AL160286.2-201ENST00000567150 934 ntBASIC20.09■□□□□ 0.81
HDAC4P56524 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HDAC4P56524 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC4P56524 AL445675.2-201ENST00000620291 557 ntBASIC20.09■□□□□ 0.81
HDAC4P56524 TMEM191A-211ENST00000637163 1067 ntBASIC20.09■□□□□ 0.81
HDAC4P56524 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
HDAC4P56524 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
HDAC4P56524 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.09■□□□□ 0.81
HDAC4P56524 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC4P56524 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC4P56524 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC4P56524 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC4P56524 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.08■□□□□ 0.81
HDAC4P56524 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC4P56524 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
HDAC4P56524 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.08■□□□□ 0.81
HDAC4P56524 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC4P56524 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC4P56524 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
HDAC4P56524 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC4P56524 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.08■□□□□ 0.81
HDAC4P56524 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC4P56524 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC4P56524 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC4P56524 RPS2P4-201ENST00000476944 856 ntBASIC20.08■□□□□ 0.81
HDAC4P56524 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.08■□□□□ 0.81
HDAC4P56524 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.08■□□□□ 0.81
HDAC4P56524 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.08■□□□□ 0.81
HDAC4P56524 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HDAC4P56524 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
HDAC4P56524 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HDAC4P56524 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
HDAC4P56524 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
HDAC4P56524 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 AC141586.3-201ENST00000562166 1838 ntBASIC20.07■□□□□ 0.8
HDAC4P56524 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.07■□□□□ 0.8
HDAC4P56524 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
HDAC4P56524 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
HDAC4P56524 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.07■□□□□ 0.8
HDAC4P56524 AP002982.1-201ENST00000492365 877 ntBASIC20.07■□□□□ 0.8
HDAC4P56524 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.07■□□□□ 0.8
HDAC4P56524 AF186192.3-201ENST00000583427 947 ntBASIC20.07■□□□□ 0.8
HDAC4P56524 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.07■□□□□ 0.8
HDAC4P56524 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.07■□□□□ 0.8
HDAC4P56524 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC4P56524 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.07■□□□□ 0.8
HDAC4P56524 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HDAC4P56524 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.06■□□□□ 0.8
HDAC4P56524 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HDAC4P56524 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 AL353807.1-201ENST00000427475 662 ntBASIC20.06■□□□□ 0.8
HDAC4P56524 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 UBE2SP1-201ENST00000450587 669 ntBASIC20.06■□□□□ 0.8
HDAC4P56524 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.06■□□□□ 0.8
HDAC4P56524 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.06■□□□□ 0.8
HDAC4P56524 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.06■□□□□ 0.8
HDAC4P56524 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.06■□□□□ 0.8
HDAC4P56524 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC4P56524 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC4P56524 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC4P56524 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC4P56524 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
HDAC4P56524 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC4P56524 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC4P56524 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC4P56524 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC4P56524 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC4P56524 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC4P56524 AC004980.1-204ENST00000429707 299 ntBASIC20.05■□□□□ 0.8
HDAC4P56524 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC4P56524 Z85996.1-201ENST00000494644 937 ntBASIC20.05■□□□□ 0.8
HDAC4P56524 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.05■□□□□ 0.8
HDAC4P56524 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC4P56524 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC4P56524 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC4P56524 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
HDAC4P56524 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HDAC4P56524 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms