Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA3P55318 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
FOXA3P55318 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
FOXA3P55318 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA3P55318 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXA3P55318 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA3P55318 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 TEX21P-204ENST00000641479 1693 ntBASIC14.43□□□□□ -0.1
FOXA3P55318 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXA3P55318 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA3P55318 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
FOXA3P55318 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXA3P55318 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXA3P55318 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC14.43□□□□□ -0.1
FOXA3P55318 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA3P55318 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 PHGDH-210ENST00000641115 1638 ntBASIC14.43□□□□□ -0.1
FOXA3P55318 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
FOXA3P55318 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXA3P55318 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXA3P55318 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA3P55318 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXA3P55318 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA3P55318 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA3P55318 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA3P55318 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
FOXA3P55318 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA3P55318 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 NT5C3AP1-201ENST00000394500 1012 ntBASIC14.42□□□□□ -0.1
FOXA3P55318 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
FOXA3P55318 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC14.42□□□□□ -0.1
FOXA3P55318 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA3P55318 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA3P55318 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC14.42□□□□□ -0.1
FOXA3P55318 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
FOXA3P55318 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
FOXA3P55318 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
FOXA3P55318 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
FOXA3P55318 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
FOXA3P55318 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA3P55318 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC14.42□□□□□ -0.1
FOXA3P55318 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
FOXA3P55318 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA3P55318 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC14.42□□□□□ -0.1
FOXA3P55318 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA3P55318 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA3P55318 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
FOXA3P55318 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC14.41□□□□□ -0.1
FOXA3P55318 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
FOXA3P55318 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
FOXA3P55318 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA3P55318 IRS3P-201ENST00000223076 1006 ntBASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms