Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
RFX1P22670 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.93■□□□□ 0.94
RFX1P22670 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RFX1P22670 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
RFX1P22670 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
RFX1P22670 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.93■□□□□ 0.94
RFX1P22670 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.93■□□□□ 0.94
RFX1P22670 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.93■□□□□ 0.94
RFX1P22670 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
RFX1P22670 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
RFX1P22670 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.93■□□□□ 0.94
RFX1P22670 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.93■□□□□ 0.94
RFX1P22670 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
RFX1P22670 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
RFX1P22670 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.93■□□□□ 0.94
RFX1P22670 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX1P22670 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX1P22670 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
RFX1P22670 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX1P22670 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX1P22670 MMP23A-201ENST00000234610 1017 ntBASIC20.92■□□□□ 0.94
RFX1P22670 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RFX1P22670 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RFX1P22670 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.92■□□□□ 0.94
RFX1P22670 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.92■□□□□ 0.94
RFX1P22670 AP003071.4-201ENST00000562276 1284 ntBASIC20.92■□□□□ 0.94
RFX1P22670 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RFX1P22670 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX1P22670 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX1P22670 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX1P22670 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX1P22670 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
RFX1P22670 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
RFX1P22670 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 AC012306.2-201ENST00000609350 630 ntBASIC20.91■□□□□ 0.94
RFX1P22670 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX1P22670 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 LINC01465-201ENST00000408887 1940 ntBASIC20.9■□□□□ 0.94
RFX1P22670 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RFX1P22670 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RFX1P22670 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
RFX1P22670 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.9■□□□□ 0.94
RFX1P22670 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.9■□□□□ 0.94
RFX1P22670 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
RFX1P22670 TUBB8P6-201ENST00000436895 1288 ntBASIC20.9■□□□□ 0.94
RFX1P22670 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.9■□□□□ 0.94
RFX1P22670 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.9■□□□□ 0.94
RFX1P22670 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RFX1P22670 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.9■□□□□ 0.94
RFX1P22670 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.9■□□□□ 0.94
RFX1P22670 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX1P22670 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
RFX1P22670 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
RFX1P22670 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.89■□□□□ 0.94
RFX1P22670 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RFX1P22670 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RFX1P22670 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
RFX1P22670 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.89■□□□□ 0.94
RFX1P22670 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX1P22670 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.89■□□□□ 0.93
RFX1P22670 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX1P22670 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RFX1P22670 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX1P22670 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RFX1P22670 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.89■□□□□ 0.93
RFX1P22670 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX1P22670 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.89■□□□□ 0.93
RFX1P22670 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX1P22670 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.89■□□□□ 0.93
RFX1P22670 AC141586.3-201ENST00000562166 1838 ntBASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms