Protein–RNA interactions for Protein: O60925

PFDN1, Prefoldin subunit 1, humanhuman

Predictions only

Length 122 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN1O60925 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PFDN1O60925 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.24■□□□□ 0.35
PFDN1O60925 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PFDN1O60925 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.24■□□□□ 0.35
PFDN1O60925 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC17.24■□□□□ 0.35
PFDN1O60925 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PFDN1O60925 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PFDN1O60925 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PFDN1O60925 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.24■□□□□ 0.35
PFDN1O60925 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PFDN1O60925 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
PFDN1O60925 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PFDN1O60925 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PFDN1O60925 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PFDN1O60925 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PFDN1O60925 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.23■□□□□ 0.35
PFDN1O60925 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.23■□□□□ 0.35
PFDN1O60925 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PFDN1O60925 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
PFDN1O60925 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 AC134043.2-201ENST00000624206 2238 ntBASIC17.23■□□□□ 0.35
PFDN1O60925 AC092850.2-201ENST00000623821 2697 ntBASIC17.23■□□□□ 0.35
PFDN1O60925 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PFDN1O60925 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PFDN1O60925 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
PFDN1O60925 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PFDN1O60925 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 FLJ38576-201ENST00000623820 2459 ntBASIC17.23■□□□□ 0.35
PFDN1O60925 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PFDN1O60925 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.23■□□□□ 0.35
PFDN1O60925 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
PFDN1O60925 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
PFDN1O60925 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
PFDN1O60925 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.22■□□□□ 0.35
PFDN1O60925 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 HES4-204ENST00000484667 667 ntTSL 3 BASIC17.22■□□□□ 0.35
PFDN1O60925 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 CR559946.2-201ENST00000623684 991 ntBASIC17.22■□□□□ 0.35
PFDN1O60925 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.22■□□□□ 0.35
PFDN1O60925 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PFDN1O60925 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
PFDN1O60925 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.21■□□□□ 0.35
PFDN1O60925 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.21■□□□□ 0.35
PFDN1O60925 HYMAI-201ENST00000635591 3347 ntBASIC17.21■□□□□ 0.35
PFDN1O60925 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
PFDN1O60925 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
PFDN1O60925 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 AL161938.1-201ENST00000569833 2180 ntBASIC17.21■□□□□ 0.35
PFDN1O60925 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
PFDN1O60925 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.21■□□□□ 0.35
PFDN1O60925 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.21■□□□□ 0.35
PFDN1O60925 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
PFDN1O60925 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
PFDN1O60925 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PFDN1O60925 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PFDN1O60925 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms