Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
AP3B1O00203 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.43■□□□□ 0.7
AP3B1O00203 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.43■□□□□ 0.7
AP3B1O00203 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.43■□□□□ 0.7
AP3B1O00203 RNA5SP413-201ENST00000516373 109 ntBASIC19.43■□□□□ 0.7
AP3B1O00203 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.43■□□□□ 0.7
AP3B1O00203 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.43■□□□□ 0.7
AP3B1O00203 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.43■□□□□ 0.7
AP3B1O00203 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.43■□□□□ 0.7
AP3B1O00203 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.43■□□□□ 0.7
AP3B1O00203 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
AP3B1O00203 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
AP3B1O00203 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
AP3B1O00203 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
AP3B1O00203 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 FEM1AP3-201ENST00000403722 1741 ntBASIC19.42■□□□□ 0.7
AP3B1O00203 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.42■□□□□ 0.7
AP3B1O00203 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
AP3B1O00203 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
AP3B1O00203 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.42■□□□□ 0.7
AP3B1O00203 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.42■□□□□ 0.7
AP3B1O00203 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
AP3B1O00203 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.42■□□□□ 0.7
AP3B1O00203 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.42■□□□□ 0.7
AP3B1O00203 MTDHP1-201ENST00000605323 784 ntBASIC19.42■□□□□ 0.7
AP3B1O00203 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.42■□□□□ 0.7
AP3B1O00203 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.42■□□□□ 0.7
AP3B1O00203 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.42■□□□□ 0.7
AP3B1O00203 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
AP3B1O00203 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.42■□□□□ 0.7
AP3B1O00203 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
AP3B1O00203 IRX1P1-201ENST00000438849 1838 ntBASIC19.41■□□□□ 0.7
AP3B1O00203 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
AP3B1O00203 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.41■□□□□ 0.7
AP3B1O00203 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 AL160286.2-201ENST00000567150 934 ntBASIC19.41■□□□□ 0.7
AP3B1O00203 AC069544.1-201ENST00000609399 999 ntBASIC19.41■□□□□ 0.7
AP3B1O00203 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
AP3B1O00203 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.41■□□□□ 0.7
AP3B1O00203 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.41■□□□□ 0.7
AP3B1O00203 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP3B1O00203 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
AP3B1O00203 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
AP3B1O00203 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.4■□□□□ 0.7
AP3B1O00203 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.4■□□□□ 0.7
AP3B1O00203 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.4■□□□□ 0.7
AP3B1O00203 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.4■□□□□ 0.7
AP3B1O00203 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
AP3B1O00203 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP3B1O00203 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms