Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 KRT18P52-201ENST00000404956 846 ntBASIC10.24□□□□□ -0.77
MSH5O43196 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC10.24□□□□□ -0.77
MSH5O43196 USP9YP7-201ENST00000436723 430 ntBASIC10.24□□□□□ -0.77
MSH5O43196 USP9YP32-201ENST00000452432 430 ntBASIC10.24□□□□□ -0.77
MSH5O43196 SNRPD2P1-201ENST00000489253 354 ntBASIC10.24□□□□□ -0.77
MSH5O43196 CEP57L1-214ENST00000521277 3832 ntTSL 2 BASIC10.24□□□□□ -0.77
MSH5O43196 AP006289.1-201ENST00000538089 277 ntBASIC10.24□□□□□ -0.77
MSH5O43196 AC009779.4-201ENST00000554248 611 ntBASIC10.24□□□□□ -0.77
MSH5O43196 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC10.24□□□□□ -0.77
MSH5O43196 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 AC120024.3-201ENST00000603167 156 ntBASIC10.24□□□□□ -0.77
MSH5O43196 AL589674.2-201ENST00000604304 337 ntBASIC10.24□□□□□ -0.77
MSH5O43196 Y_RNA.818-201ENST00000618813 71 ntBASIC10.24□□□□□ -0.77
MSH5O43196 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 CKAP2-203ENST00000378037 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 IL12B-201ENST00000231228 2761 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC10.24□□□□□ -0.77
MSH5O43196 ZNF708-201ENST00000356929 4004 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
MSH5O43196 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
MSH5O43196 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
MSH5O43196 PCDHB1-201ENST00000306549 8210 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
MSH5O43196 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
MSH5O43196 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
MSH5O43196 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC10.23□□□□□ -0.77
MSH5O43196 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
MSH5O43196 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC10.23□□□□□ -0.77
MSH5O43196 Y_RNA.437-201ENST00000384113 113 ntBASIC10.23□□□□□ -0.77
MSH5O43196 RPL36P19-201ENST00000430744 301 ntBASIC10.23□□□□□ -0.77
MSH5O43196 AC098828.1-201ENST00000436164 440 ntBASIC10.23□□□□□ -0.77
MSH5O43196 AL604028.2-201ENST00000437848 788 ntBASIC10.23□□□□□ -0.77
MSH5O43196 LINC01015-204ENST00000445296 399 ntTSL 3 BASIC10.23□□□□□ -0.77
MSH5O43196 PSPC1P2-201ENST00000455130 225 ntBASIC10.23□□□□□ -0.77
MSH5O43196 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC10.23□□□□□ -0.77
MSH5O43196 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC10.23□□□□□ -0.77
MSH5O43196 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC10.23□□□□□ -0.77
MSH5O43196 CDY1-202ENST00000361963 2177 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
MSH5O43196 COL6A4P1-202ENST00000487147 4317 ntBASIC10.23□□□□□ -0.77
MSH5O43196 C7orf31-202ENST00000409280 3357 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
MSH5O43196 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
MSH5O43196 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
MSH5O43196 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
MSH5O43196 PLP1-220ENST00000612423 3132 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
MSH5O43196 AP003119.3-201ENST00000566747 4192 ntBASIC10.22□□□□□ -0.77
MSH5O43196 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
MSH5O43196 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 LINC00208-201ENST00000304233 2150 ntTSL 2 BASIC10.22□□□□□ -0.77
MSH5O43196 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
MSH5O43196 CSTF2T-201ENST00000331173 4105 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
MSH5O43196 AL137782.1-201ENST00000563635 4128 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 MEF2A-205ENST00000557942 5413 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 RNU6-969P-201ENST00000383900 105 ntBASIC10.22□□□□□ -0.77
MSH5O43196 RNU6-754P-201ENST00000391166 107 ntBASIC10.22□□□□□ -0.77
MSH5O43196 RN7SKP137-201ENST00000411074 307 ntBASIC10.22□□□□□ -0.77
MSH5O43196 MAP1LC3BP1-201ENST00000417653 379 ntBASIC10.22□□□□□ -0.77
MSH5O43196 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC10.22□□□□□ -0.77
MSH5O43196 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
MSH5O43196 RPS11P7-201ENST00000442125 465 ntBASIC10.22□□□□□ -0.77
MSH5O43196 AL031681.1-201ENST00000443304 400 ntBASIC10.22□□□□□ -0.77
MSH5O43196 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC10.22□□□□□ -0.77
MSH5O43196 RN7SL549P-201ENST00000478997 282 ntBASIC10.22□□□□□ -0.77
MSH5O43196 RN7SL612P-201ENST00000497704 295 ntBASIC10.22□□□□□ -0.77
MSH5O43196 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC10.22□□□□□ -0.77
MSH5O43196 SNRPGP16-201ENST00000533275 226 ntBASIC10.22□□□□□ -0.77
MSH5O43196 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
MSH5O43196 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC10.22□□□□□ -0.77
MSH5O43196 RN7SL154P-201ENST00000578043 324 ntBASIC10.22□□□□□ -0.77
MSH5O43196 AC005884.1-201ENST00000588604 429 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 MIR8082-201ENST00000612488 81 ntBASIC10.22□□□□□ -0.77
MSH5O43196 LZTS1-204ENST00000616228 231 ntTSL 2 BASIC10.22□□□□□ -0.77
MSH5O43196 AC013791.1-201ENST00000616619 62 ntBASIC10.22□□□□□ -0.77
MSH5O43196 AC048347.1-201ENST00000624621 427 ntBASIC10.22□□□□□ -0.77
MSH5O43196 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
MSH5O43196 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 TARS2P1-201ENST00000506124 2041 ntBASIC10.22□□□□□ -0.77
MSH5O43196 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
MSH5O43196 LPP-208ENST00000448637 5835 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
MSH5O43196 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC10.22□□□□□ -0.77
MSH5O43196 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
MSH5O43196 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
MSH5O43196 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
MSH5O43196 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
MSH5O43196 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
MSH5O43196 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC10.21□□□□□ -0.77
MSH5O43196 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC10.21□□□□□ -0.77
MSH5O43196 AL031119.1-201ENST00000404707 1879 ntBASIC10.21□□□□□ -0.77
MSH5O43196 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC10.21□□□□□ -0.77
MSH5O43196 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.77
MSH5O43196 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC10.21□□□□□ -0.77
MSH5O43196 CORIN-207ENST00000505909 3018 ntTSL 5 BASIC10.21□□□□□ -0.77
MSH5O43196 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
MSH5O43196 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 552.1 ms