RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 DCAF8L2P0C7V8 631 aa14.38□□□□□ -0.11
SCN9A-201ENST00000303354 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
SCN9A-201ENST00000303354 SUPT5HO00267 1087 aaKnown RBP13.19□□□□□ -0.3
SCN9A-201ENST00000303354 SHROOM4Q9ULL8 1493 aa13.05□□□□□ -0.32
SCN9A-201ENST00000303354 TTBK1Q5TCY1 1321 aaPredicted RBP12.84□□□□□ -0.35
SCN9A-201ENST00000303354 RANGAP1P46060 587 aaPredicted RBP12.75□□□□□ -0.37
SCN9A-201ENST00000303354 FAM9AQ8IZU1 332 aaPredicted RBP12.65□□□□□ -0.38
SCN9A-201ENST00000303354 ATP1B4Q9UN42 357 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-201ENST00000303354 APLP2Q06481 763 aa12.4□□□□□ -0.42
SCN9A-201ENST00000303354 CHIC1Q5VXU3 224 aa12.23□□□□□ -0.45
SCN9A-201ENST00000303354 PCGF6Q9BYE7 350 aa12.2□□□□□ -0.46
SCN9A-201ENST00000303354 NISCHQ9Y2I1 1504 aa12.19□□□□□ -0.46
SCN9A-201ENST00000303354 PPARGC1BQ86YN6 1023 aaKnown RBP12.18□□□□□ -0.46
SCN9A-201ENST00000303354 MYT1LQ9UL68 1186 aa12.17□□□□□ -0.46
SCN9A-201ENST00000303354 CNGB1Q14028 1251 aaPredicted RBP12.06□□□□□ -0.48
SCN9A-201ENST00000303354 UBTFP17480 764 aaKnown RBP12.02□□□□□ -0.49
SCN9A-201ENST00000303354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12□□□□□ -0.49
SCN9A-201ENST00000303354 HNRNPUL2Q1KMD3 747 aaKnown RBP12□□□□□ -0.49
SCN9A-201ENST00000303354 POLR3GLQ9BT43 218 aa11.97□□□□□ -0.49
SCN9A-201ENST00000303354 TRIM41Q8WV44 630 aa11.96□□□□□ -0.49
SCN9A-201ENST00000303354 ITGAEP38570 1179 aa11.95□□□□□ -0.5
SCN9A-201ENST00000303354 YTHDC1Q96MU7 727 aaKnown RBP11.92□□□□□ -0.5
SCN9A-201ENST00000303354 CCER1Q8TC90 406 aaPredicted RBP11.91□□□□□ -0.5
SCN9A-201ENST00000303354 PELP1Q8IZL8 1130 aaKnown RBP11.9□□□□□ -0.51
SCN9A-201ENST00000303354 ERICH6Q7L0X2 663 aa11.83□□□□□ -0.52
SCN9A-201ENST00000303354 SLC4A1APQ9BWU0 796 aaKnown RBP11.83□□□□□ -0.52
SCN9A-201ENST00000303354 PLPPR3Q6T4P5 718 aa11.7□□□□□ -0.54
SCN9A-201ENST00000303354 PABPN1Q86U42 306 aaKnown RBP eCLIP11.66□□□□□ -0.54
SCN9A-201ENST00000303354 FBLN2P98095 1184 aa11.61□□□□□ -0.55
SCN9A-201ENST00000303354 MYT1Q01538 1121 aa11.57□□□□□ -0.56
SCN9A-201ENST00000303354 BCL11AQ9H165 835 aa11.57□□□□□ -0.56
SCN9A-201ENST00000303354 ARID3CA6NKF2 412 aa11.55□□□□□ -0.56
SCN9A-201ENST00000303354 LOC105371045A0A1W2PR82 267 aa11.55□□□□□ -0.56
SCN9A-201ENST00000303354 SLC24A1O60721 1099 aa11.53□□□□□ -0.56
SCN9A-201ENST00000303354 NEFLP07196 543 aa11.5□□□□□ -0.57
SCN9A-201ENST00000303354 CENPBP07199 599 aaPredicted RBP11.49□□□□□ -0.57
SCN9A-201ENST00000303354 BCANQ96GW7 911 aa11.48□□□□□ -0.57
SCN9A-201ENST00000303354 FAM50AQ14320 339 aaKnown RBP11.44□□□□□ -0.58
SCN9A-201ENST00000303354 TRIM52Q96A61 297 aa11.42□□□□□ -0.58
SCN9A-201ENST00000303354 ZNF326Q5BKZ1 582 aaKnown RBP11.4□□□□□ -0.58
SCN9A-201ENST00000303354 NEUROD1Q13562 356 aa11.39□□□□□ -0.59
SCN9A-201ENST00000303354 ABCC9O60706 1549 aa11.38□□□□□ -0.59
SCN9A-201ENST00000303354 SENP3Q9H4L4 574 aaPredicted RBP11.38□□□□□ -0.59
SCN9A-201ENST00000303354 P3H3Q8IVL6 736 aa11.36□□□□□ -0.59
SCN9A-201ENST00000303354 PLEKHG5O94827 1062 aa11.33□□□□□ -0.6
SCN9A-201ENST00000303354 DAXXQ9UER7 740 aaPredicted RBP11.32□□□□□ -0.6
SCN9A-201ENST00000303354 ZEB1P37275 1124 aaPredicted RBP11.3□□□□□ -0.6
SCN9A-201ENST00000303354 CLSPNQ9HAW4 1339 aa11.27□□□□□ -0.6
SCN9A-201ENST00000303354 ZNF777Q9ULD5 760 aaPredicted RBP11.24□□□□□ -0.61
SCN9A-201ENST00000303354 CHGAP10645 457 aaKnown RBP11.19□□□□□ -0.62
SCN9A-201ENST00000303354 TRIM26Q12899 539 aaPredicted RBP11.19□□□□□ -0.62
SCN9A-201ENST00000303354 SCAF1Q9H7N4 1312 aaKnown RBP11.18□□□□□ -0.62
SCN9A-201ENST00000303354 A0A0G2JS52 829 aa11.17□□□□□ -0.62
SCN9A-201ENST00000303354 HRCP23327 699 aa11.1□□□□□ -0.63
SCN9A-201ENST00000303354 ZBTB7CA1YPR0 619 aa11.09□□□□□ -0.63
SCN9A-201ENST00000303354 STAG3Q9UJ98 1225 aa11.09□□□□□ -0.63
SCN9A-201ENST00000303354 ESF1Q9H501 851 aaKnown RBP11.09□□□□□ -0.63
SCN9A-201ENST00000303354 ZNF316A6NFI3 1004 aaPredicted RBP11.08□□□□□ -0.64
SCN9A-201ENST00000303354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.02□□□□□ -0.658e-7■□□□□ 11.1
SCN9A-201ENST00000303354 SALL2Q9Y467 1007 aaPredicted RBP11.02□□□□□ -0.65
SCN9A-201ENST00000303354 CANXP27824 592 aaKnown RBP11.01□□□□□ -0.65
SCN9A-201ENST00000303354 ZBTB47Q9UFB7 747 aaPredicted RBP11□□□□□ -0.65
SCN9A-201ENST00000303354 DIEXFQ68CQ4 756 aaKnown RBP10.94□□□□□ -0.66
SCN9A-201ENST00000303354 NPM1P06748 294 aaKnown RBP eCLIP10.94□□□□□ -0.66
SCN9A-201ENST00000303354 CHIC2Q9UKJ5 165 aa10.93□□□□□ -0.66
SCN9A-201ENST00000303354 C14orf37Q86TY3 774 aa10.92□□□□□ -0.66
SCN9A-201ENST00000303354 SENP3-EIF4A1A0A087X0R7 540 aa10.91□□□□□ -0.66
SCN9A-201ENST00000303354 NEFMP07197 916 aa10.9□□□□□ -0.66
SCN9A-201ENST00000303354 KCNH8Q96L42 1107 aa10.88□□□□□ -0.67
SCN9A-201ENST00000303354 NPM2Q86SE8 214 aaKnown RBP10.88□□□□□ -0.67
SCN9A-201ENST00000303354 KDM2AQ9Y2K7 1162 aa10.87□□□□□ -0.67
SCN9A-201ENST00000303354 ANP32CO43423 234 aa10.87□□□□□ -0.67
SCN9A-201ENST00000303354 ARXQ96QS3 562 aa10.84□□□□□ -0.67
SCN9A-201ENST00000303354 ARID4BQ4LE39 1312 aaPredicted RBP10.84□□□□□ -0.67
SCN9A-201ENST00000303354 TRHP20396 242 aaPredicted RBP10.83□□□□□ -0.68
SCN9A-201ENST00000303354 RTL5Q5HYW3 569 aaPredicted RBP10.83□□□□□ -0.68
SCN9A-201ENST00000303354 HIRIP3Q9BW71 556 aaPredicted RBP10.8□□□□□ -0.68
SCN9A-201ENST00000303354 TULP1O00294 542 aaPredicted RBP10.79□□□□□ -0.68
SCN9A-201ENST00000303354 HAP1P54257 671 aaPredicted RBP10.78□□□□□ -0.68
SCN9A-201ENST00000303354 FAM9BQ8IZU0 186 aa10.77□□□□□ -0.69
SCN9A-201ENST00000303354 LMOD2Q6P5Q4 547 aa10.75□□□□□ -0.69
SCN9A-201ENST00000303354 CHMP7Q8WUX9 453 aaPredicted RBP10.74□□□□□ -0.69
SCN9A-201ENST00000303354 TAOK2Q9UL54 1235 aa10.74□□□□□ -0.69
SCN9A-201ENST00000303354 GTF3C3Q9Y5Q9 886 aa10.71□□□□□ -0.69
SCN9A-201ENST00000303354 MLECQ14165 292 aa10.7□□□□□ -0.7
SCN9A-201ENST00000303354 CDK11AQ9UQ88 783 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-201ENST00000303354 PPP1R15AO75807 674 aaPredicted RBP10.69□□□□□ -0.7
SCN9A-201ENST00000303354 TPRNQ4KMQ1 711 aa10.69□□□□□ -0.7
SCN9A-201ENST00000303354 RGL3Q3MIN7 710 aa10.68□□□□□ -0.7
SCN9A-201ENST00000303354 PPM1GO15355 546 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-201ENST00000303354 CSRNP3Q8WYN3 585 aa10.67□□□□□ -0.7
SCN9A-201ENST00000303354 DDX10Q13206 875 aaKnown RBP10.66□□□□□ -0.7
SCN9A-201ENST00000303354 IRX6P78412 446 aaPredicted RBP10.65□□□□□ -0.7
SCN9A-201ENST00000303354 TMC1Q8TDI8 760 aa10.65□□□□□ -0.7
SCN9A-201ENST00000303354 RRP7BPQ9NSQ0 103 aa10.64□□□□□ -0.71
SCN9A-201ENST00000303354 SOX12O15370 315 aa10.64□□□□□ -0.71
SCN9A-201ENST00000303354 SCRIBQ14160 1630 aa10.63□□□□□ -0.71
SCN9A-201ENST00000303354 HSP90AA1P07900 732 aaKnown RBP10.61□□□□□ -0.71
SCN9A-201ENST00000303354 HNRNPUQ00839 825 aaKnown RBP eCLIP10.59□□□□□ -0.71
SCN9A-201ENST00000303354 NPHP1O15259 732 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms