RNA–Protein interactions for RNA: ENST00000274938.7

SCUBE3-201, Transcript of signal peptide, CUB domain and EGF like domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCUBE3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3-201ENST00000274938 PELP1Q8IZL8 1130 aaKnown RBP14.27□□□□□ -0.12
SCUBE3-201ENST00000274938 DCAF8L2P0C7V8 631 aa14.27□□□□□ -0.13
SCUBE3-201ENST00000274938 SUPT5HO00267 1087 aaKnown RBP13.79□□□□□ -0.2
SCUBE3-201ENST00000274938 MYT1Q01538 1121 aa13.66□□□□□ -0.22
SCUBE3-201ENST00000274938 CCER1Q8TC90 406 aaPredicted RBP13.59□□□□□ -0.23
SCUBE3-201ENST00000274938 ERICH6Q7L0X2 663 aa13.58□□□□□ -0.23
SCUBE3-201ENST00000274938 CENPBP07199 599 aaPredicted RBP13.52□□□□□ -0.24
SCUBE3-201ENST00000274938 APLP2Q06481 763 aa13.52□□□□□ -0.25
SCUBE3-201ENST00000274938 ZEB1P37275 1124 aaPredicted RBP13.39□□□□□ -0.27
SCUBE3-201ENST00000274938 EHMT2Q96KQ7 1210 aa13.32□□□□□ -0.28
SCUBE3-201ENST00000274938 SHROOM4Q9ULL8 1493 aa13.27□□□□□ -0.28
SCUBE3-201ENST00000274938 FAM9AQ8IZU1 332 aaPredicted RBP13.24□□□□□ -0.29
SCUBE3-201ENST00000274938 PCGF6Q9BYE7 350 aa13.22□□□□□ -0.29
SCUBE3-201ENST00000274938 NEFLP07196 543 aa13.2□□□□□ -0.3
SCUBE3-201ENST00000274938 NISCHQ9Y2I1 1504 aa13.11□□□□□ -0.31
SCUBE3-201ENST00000274938 TTBK1Q5TCY1 1321 aaPredicted RBP12.98□□□□□ -0.33
SCUBE3-201ENST00000274938 YTHDC1Q96MU7 727 aaKnown RBP12.95□□□□□ -0.34
SCUBE3-201ENST00000274938 DAXXQ9UER7 740 aaPredicted RBP12.9□□□□□ -0.35
SCUBE3-201ENST00000274938 TRIM41Q8WV44 630 aa12.83□□□□□ -0.36
SCUBE3-201ENST00000274938 ATP1B4Q9UN42 357 aaPredicted RBP12.73□□□□□ -0.37
SCUBE3-201ENST00000274938 RANGAP1P46060 587 aaPredicted RBP12.72□□□□□ -0.37
SCUBE3-201ENST00000274938 UBTFP17480 764 aaKnown RBP12.72□□□□□ -0.37
SCUBE3-201ENST00000274938 TRIM26Q12899 539 aaPredicted RBP12.69□□□□□ -0.38
SCUBE3-201ENST00000274938 RTL5Q5HYW3 569 aaPredicted RBP12.68□□□□□ -0.38
SCUBE3-201ENST00000274938 HRCP23327 699 aa12.67□□□□□ -0.38
SCUBE3-201ENST00000274938 ZNF316A6NFI3 1004 aaPredicted RBP12.57□□□□□ -0.4
SCUBE3-201ENST00000274938 POLR3GLQ9BT43 218 aa12.43□□□□□ -0.42
SCUBE3-201ENST00000274938 CLSPNQ9HAW4 1339 aa12.43□□□□□ -0.42
SCUBE3-201ENST00000274938 PPARGC1BQ86YN6 1023 aaKnown RBP12.39□□□□□ -0.43
SCUBE3-201ENST00000274938 DIEXFQ68CQ4 756 aaKnown RBP12.37□□□□□ -0.43
SCUBE3-201ENST00000274938 ITGAEP38570 1179 aa12.32□□□□□ -0.44
SCUBE3-201ENST00000274938 CDK11AQ9UQ88 783 aaPredicted RBP12.3□□□□□ -0.44
SCUBE3-201ENST00000274938 HNRNPUL2Q1KMD3 747 aaKnown RBP12.29□□□□□ -0.44
SCUBE3-201ENST00000274938 MYT1LQ9UL68 1186 aa12.26□□□□□ -0.45
SCUBE3-201ENST00000274938 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.23□□□□□ -0.45
SCUBE3-201ENST00000274938 GTF3C3Q9Y5Q9 886 aa12.22□□□□□ -0.45
SCUBE3-201ENST00000274938 CNGB1Q14028 1251 aaPredicted RBP12.2□□□□□ -0.46
SCUBE3-201ENST00000274938 ZBTB47Q9UFB7 747 aaPredicted RBP12.19□□□□□ -0.46
SCUBE3-201ENST00000274938 SLC4A1APQ9BWU0 796 aaKnown RBP12.17□□□□□ -0.46
SCUBE3-201ENST00000274938 CHIC1Q5VXU3 224 aa12.16□□□□□ -0.46
SCUBE3-201ENST00000274938 ANP32CO43423 234 aa12.16□□□□□ -0.46
SCUBE3-201ENST00000274938 BCANQ96GW7 911 aa12.15□□□□□ -0.46
SCUBE3-201ENST00000274938 ANP32AP39687 249 aaKnown RBP12.14□□□□□ -0.47
SCUBE3-201ENST00000274938 GLIPR1L2Q4G1C9 344 aa12.14□□□□□ -0.47
SCUBE3-201ENST00000274938 LOC105371045A0A1W2PR82 267 aa12.13□□□□□ -0.47
SCUBE3-201ENST00000274938 ANP32BQ92688 251 aaKnown RBP12.07□□□□□ -0.48
SCUBE3-201ENST00000274938 ACIN1Q9UKV3 1341 aaKnown RBP12.06□□□□□ -0.48
SCUBE3-201ENST00000274938 EIF5BO60841 1220 aaKnown RBP12.05□□□□□ -0.48
SCUBE3-201ENST00000274938 CANXP27824 592 aaKnown RBP12.03□□□□□ -0.48
SCUBE3-201ENST00000274938 TRIM52Q96A61 297 aa12.03□□□□□ -0.48
SCUBE3-201ENST00000274938 FAM50AQ14320 339 aaKnown RBP12.02□□□□□ -0.49
SCUBE3-201ENST00000274938 NEUROD1Q13562 356 aa11.98□□□□□ -0.49
SCUBE3-201ENST00000274938 NEFMP07197 916 aa11.96□□□□□ -0.5
SCUBE3-201ENST00000274938 UPF2Q9HAU5 1272 aaKnown RBP11.9□□□□□ -0.5
SCUBE3-201ENST00000274938 NPM2Q86SE8 214 aaKnown RBP11.9□□□□□ -0.5
SCUBE3-201ENST00000274938 ZNF326Q5BKZ1 582 aaKnown RBP11.87□□□□□ -0.51
SCUBE3-201ENST00000274938 HSP90AA1P07900 732 aaKnown RBP11.86□□□□□ -0.51
SCUBE3-201ENST00000274938 FKBP8Q14318 412 aa11.82□□□□□ -0.52
SCUBE3-201ENST00000274938 SLC24A1O60721 1099 aa11.76□□□□□ -0.53
SCUBE3-201ENST00000274938 BCL11AQ9H165 835 aa11.76□□□□□ -0.53
SCUBE3-201ENST00000274938 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.74□□□□□ -0.53
SCUBE3-201ENST00000274938 ANP32EQ9BTT0 268 aa11.73□□□□□ -0.53
SCUBE3-201ENST00000274938 HNRNPUQ00839 825 aaKnown RBP eCLIP11.71□□□□□ -0.54
SCUBE3-201ENST00000274938 CCDC136Q96JN2 1154 aa11.71□□□□□ -0.54
SCUBE3-201ENST00000274938 TNNT2P45379 298 aaPredicted RBP11.69□□□□□ -0.54
SCUBE3-201ENST00000274938 NBR1Q14596 966 aa11.69□□□□□ -0.54
SCUBE3-201ENST00000274938 DDRGK1Q96HY6 314 aa11.67□□□□□ -0.54
SCUBE3-201ENST00000274938 TONSLQ96HA7 1378 aa11.66□□□□□ -0.54
SCUBE3-201ENST00000274938 ARXQ96QS3 562 aa11.63□□□□□ -0.55
SCUBE3-201ENST00000274938 TRIM44Q96DX7 344 aaPredicted RBP11.63□□□□□ -0.55
SCUBE3-201ENST00000274938 BECN1Q14457 450 aa11.63□□□□□ -0.55
SCUBE3-201ENST00000274938 CDK11BP21127 795 aaKnown RBP11.61□□□□□ -0.55
SCUBE3-201ENST00000274938 FAM9BQ8IZU0 186 aa11.61□□□□□ -0.55
SCUBE3-201ENST00000274938 GOLGA6L22H0YM25 854 aa11.6□□□□□ -0.55
SCUBE3-201ENST00000274938 NCLP19338 710 aaKnown RBP11.6□□□□□ -0.55
SCUBE3-201ENST00000274938 ERICH6BQ5W0A0 696 aa11.58□□□□□ -0.55
SCUBE3-201ENST00000274938 TMC1Q8TDI8 760 aa11.57□□□□□ -0.56
SCUBE3-201ENST00000274938 CSRNP3Q8WYN3 585 aa11.57□□□□□ -0.56
SCUBE3-201ENST00000274938 DDX10Q13206 875 aaKnown RBP11.57□□□□□ -0.56
SCUBE3-201ENST00000274938 MYH16Q9H6N6 1097 aa11.56□□□□□ -0.56
SCUBE3-201ENST00000274938 PPM1GO15355 546 aaPredicted RBP11.56□□□□□ -0.56
SCUBE3-201ENST00000274938 WDR43Q15061 677 aaKnown RBP eCLIP11.55□□□□□ -0.56
SCUBE3-201ENST00000274938 DCAF1Q9Y4B6 1507 aa11.54□□□□□ -0.56
SCUBE3-201ENST00000274938 AMER1Q5JTC6 1135 aaPredicted RBP11.53□□□□□ -0.56
SCUBE3-201ENST00000274938 MRS2Q9HD23 443 aa11.52□□□□□ -0.56
SCUBE3-201ENST00000274938 SCAF1Q9H7N4 1312 aaKnown RBP11.52□□□□□ -0.57
SCUBE3-201ENST00000274938 RTN4Q9NQC3 1192 aaKnown RBP11.5□□□□□ -0.57
SCUBE3-201ENST00000274938 PTMAP06454 111 aaKnown RBP11.49□□□□□ -0.57
SCUBE3-201ENST00000274938 ZNF777Q9ULD5 760 aaPredicted RBP11.49□□□□□ -0.57
SCUBE3-201ENST00000274938 SALL2Q9Y467 1007 aaPredicted RBP11.46□□□□□ -0.57
SCUBE3-201ENST00000274938 ZRSR1Q15695 479 aaKnown RBP11.45□□□□□ -0.58
SCUBE3-201ENST00000274938 NAP1L5Q96NT1 182 aaPredicted RBP11.44□□□□□ -0.58
SCUBE3-201ENST00000274938 ESF1Q9H501 851 aaKnown RBP11.44□□□□□ -0.58
SCUBE3-201ENST00000274938 FBLN2P98095 1184 aa11.44□□□□□ -0.58
SCUBE3-201ENST00000274938 DNTTIP2Q5QJE6 756 aaKnown RBP11.44□□□□□ -0.58
SCUBE3-201ENST00000274938 P3H3Q8IVL6 736 aa11.44□□□□□ -0.58
SCUBE3-201ENST00000274938 STAG3Q9UJ98 1225 aa11.42□□□□□ -0.58
SCUBE3-201ENST00000274938 MIER1Q8N108 512 aa11.41□□□□□ -0.58
SCUBE3-201ENST00000274938 CASC1Q6TDU7 716 aa11.41□□□□□ -0.58
SCUBE3-201ENST00000274938 CHGAP10645 457 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms