Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 CD320-202ENST00000537716 1119 ntTSL 2 BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 AC121338.2-201ENST00000622535 1744 ntBASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
NOTCH3Q9UM47 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 RCC2P6-201ENST00000526625 1557 ntBASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 COPE-203ENST00000351079 907 ntTSL 2 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 Z85996.1-201ENST00000494644 937 ntBASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 AL121894.2-201ENST00000602977 491 ntBASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 AL023803.3-201ENST00000615559 522 ntBASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 AL138966.2-201ENST00000621997 464 ntBASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
NOTCH3Q9UM47 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 AC008040.2-201ENST00000461049 708 ntBASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 AC112907.3-201ENST00000577781 2400 ntBASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 HLA-G-202ENST00000376815 851 ntBASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 HLA-G-203ENST00000376818 1127 ntBASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 AC004951.3-201ENST00000418645 1148 ntBASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 FAM207BP-201ENST00000447172 505 ntBASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 TOLLIP-AS1-201ENST00000530897 939 ntBASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 AC139887.4-201ENST00000607877 719 ntBASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 CLN6-221ENST00000637494 765 ntTSL 5 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 AC116351.2-201ENST00000606540 1585 ntBASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC14.84□□□□□ -0.03
NOTCH3Q9UM47 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NOTCH3Q9UM47 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
NOTCH3Q9UM47 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.83□□□□□ -0.03
NOTCH3Q9UM47 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NOTCH3Q9UM47 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.83□□□□□ -0.03
NOTCH3Q9UM47 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NOTCH3Q9UM47 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
NOTCH3Q9UM47 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC14.83□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms