Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 SLC25A1P4-201ENST00000567977 778 ntBASIC20.63■□□□□ 0.89
SIX4Q9UIU6 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 TEX21P-204ENST00000641479 1693 ntBASIC20.63■□□□□ 0.89
SIX4Q9UIU6 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX4Q9UIU6 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 CYP2D8P-201ENST00000433633 1490 ntBASIC20.62■□□□□ 0.89
SIX4Q9UIU6 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 MMP23A-201ENST00000234610 1017 ntBASIC20.62■□□□□ 0.89
SIX4Q9UIU6 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 AL032819.2-201ENST00000624543 2162 ntBASIC20.62■□□□□ 0.89
SIX4Q9UIU6 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX4Q9UIU6 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 AC116562.4-201ENST00000641316 2276 ntBASIC20.61■□□□□ 0.89
SIX4Q9UIU6 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 CRYGFP-201ENST00000418459 633 ntBASIC20.61■□□□□ 0.89
SIX4Q9UIU6 MFAP1P1-201ENST00000442257 1255 ntBASIC20.61■□□□□ 0.89
SIX4Q9UIU6 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 CKBP1-201ENST00000565489 1086 ntBASIC20.61■□□□□ 0.89
SIX4Q9UIU6 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX4Q9UIU6 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.6■□□□□ 0.89
SIX4Q9UIU6 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX4Q9UIU6 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms