Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 AC005363.2-201ENST00000618631 242 ntBASIC20.75■□□□□ 0.91
CNTN3Q9P232 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.75■□□□□ 0.91
CNTN3Q9P232 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CNTN3Q9P232 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNTN3Q9P232 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNTN3Q9P232 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNTN3Q9P232 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNTN3Q9P232 AC113347.1-201ENST00000413321 391 ntBASIC20.74■□□□□ 0.91
CNTN3Q9P232 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNTN3Q9P232 SLC25A1P2-201ENST00000430693 912 ntBASIC20.74■□□□□ 0.91
CNTN3Q9P232 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CNTN3Q9P232 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CNTN3Q9P232 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CNTN3Q9P232 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CNTN3Q9P232 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CNTN3Q9P232 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.73■□□□□ 0.91
CNTN3Q9P232 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.73■□□□□ 0.91
CNTN3Q9P232 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.73■□□□□ 0.91
CNTN3Q9P232 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 INGX-201ENST00000359239 846 ntBASIC20.73■□□□□ 0.91
CNTN3Q9P232 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.73■□□□□ 0.91
CNTN3Q9P232 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 SLC25A3P1-201ENST00000443844 931 ntBASIC20.73■□□□□ 0.91
CNTN3Q9P232 KRT18P21-201ENST00000515767 1272 ntBASIC20.73■□□□□ 0.91
CNTN3Q9P232 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
CNTN3Q9P232 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.73■□□□□ 0.91
CNTN3Q9P232 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTN3Q9P232 AFG3L1P-217ENST00000557444 2447 ntBASIC20.73■□□□□ 0.91
CNTN3Q9P232 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 CA15P1-201ENST00000481698 905 ntBASIC20.72■□□□□ 0.91
CNTN3Q9P232 AC128688.1-201ENST00000487626 519 ntBASIC20.72■□□□□ 0.91
CNTN3Q9P232 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 FAM87A-204ENST00000613235 858 ntBASIC20.72■□□□□ 0.91
CNTN3Q9P232 AL023803.3-201ENST00000615559 522 ntBASIC20.72■□□□□ 0.91
CNTN3Q9P232 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTN3Q9P232 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.72■□□□□ 0.91
CNTN3Q9P232 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms