Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 PNMA6B-201ENST00000538162 1200 ntBASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 AC142086.2-201ENST00000569753 217 ntBASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 HLA-B-256ENST00000639848 1089 ntBASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 SDHAP1-207ENST00000440850 2000 ntBASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM56Q9BRZ2 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM56Q9BRZ2 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 ZNF815P-204ENST00000434898 1737 ntBASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM56Q9BRZ2 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 SOX15-203ENST00000570788 1093 ntBASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 AC060766.5-201ENST00000590539 871 ntBASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM56Q9BRZ2 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms