Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 KRT8P41-201ENST00000533985 1514 ntBASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 AC116562.4-201ENST00000641316 2276 ntBASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 ZNF815P-204ENST00000434898 1737 ntBASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NKX2-3Q8TAU0 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 AC010947.1-201ENST00000623454 693 ntBASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 CYP2D8P-201ENST00000433633 1490 ntBASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC22.84■■□□□ 1.25
NKX2-3Q8TAU0 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 ANKRD18DP-204ENST00000455355 1975 ntBASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 LIN28AP1-201ENST00000429574 405 ntBASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 WWOX-216ENST00000569818 525 ntBASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NKX2-3Q8TAU0 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.24
NKX2-3Q8TAU0 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
NKX2-3Q8TAU0 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
NKX2-3Q8TAU0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
NKX2-3Q8TAU0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 KRT16P1-201ENST00000399124 1418 ntBASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 LINC01238-205ENST00000567549 1107 ntBASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC22.82■■□□□ 1.24
NKX2-3Q8TAU0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 KRT126P-201ENST00000549467 1181 ntBASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC22.81■■□□□ 1.24
NKX2-3Q8TAU0 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC22.8■■□□□ 1.24
NKX2-3Q8TAU0 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
NKX2-3Q8TAU0 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms