Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 AC104417.2-201ENST00000562989 1793 ntBASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 AC020763.4-201ENST00000623414 4170 ntBASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 AP003097.1-201ENST00000530657 1135 ntBASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 AC008403.3-201ENST00000598924 454 ntBASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 AC141586.3-201ENST00000562166 1838 ntBASIC21.18■□□□□ 0.98
CCDC40Q4G0X9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 SDHAP1-207ENST00000440850 2000 ntBASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
CCDC40Q4G0X9 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC40Q4G0X9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms