Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.655e-6■□□□□ 10
U2AF1Q01081 SAFB-214ENST00000592707 940 ntTSL 218.56■□□□□ 0.565e-6■□□□□ 10
U2AF1Q01081 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.425e-6■□□□□ 10
U2AF1Q01081 SAFB-212ENST00000592396 620 ntTSL 48.03□□□□□ -1.125e-6■□□□□ 10
U2AF1Q01081 CSNK1D-221ENST00000582844 957 ntTSL 528.51■■■□□ 2.158e-9■□□□□ 10
U2AF1Q01081 CSNK1D-216ENST00000581108 607 ntTSL 228.51■■■□□ 2.158e-9■□□□□ 10
U2AF1Q01081 CSNK1D-214ENST00000580565 566 ntTSL 423.42■■□□□ 1.348e-9■□□□□ 10
U2AF1Q01081 CSNK1D-205ENST00000403276 1040 ntTSL 222.51■■□□□ 1.198e-9■□□□□ 10
U2AF1Q01081 CSNK1D-209ENST00000578904 1269 ntTSL 318.44■□□□□ 0.548e-9■□□□□ 10
U2AF1Q01081 ELP2-218ENST00000541748 674 ntTSL 219.07■□□□□ 0.642e-7■□□□□ 10
U2AF1Q01081 ELP2-227ENST00000545302 635 ntTSL 217.48■□□□□ 0.392e-7■□□□□ 10
U2AF1Q01081 ELP2-209ENST00000536830 636 ntTSL 216.88■□□□□ 0.292e-7■□□□□ 10
U2AF1Q01081 EML4-204ENST00000406175 4622 ntTSL 1 (best)7□□□□□ -1.292e-6■□□□□ 10
U2AF1Q01081 ATXN2L-210ENST00000562867 609 ntTSL 224.23■■□□□ 1.479e-14■□□□□ 10
U2AF1Q01081 ATXN2L-216ENST00000564656 552 ntTSL 420.04■□□□□ 0.89e-14■□□□□ 10
U2AF1Q01081 ATXN2L-206ENST00000561539 509 ntTSL 36.3□□□□□ -1.49e-14■□□□□ 10
U2AF1Q01081 ATXN2L-220ENST00000566080 329 ntTSL 34.38□□□□□ -1.719e-14■□□□□ 10
U2AF1Q01081 ITIH3-209ENST00000493136 2179 ntTSL 218.78■□□□□ 0.66e-8■□□□□ 10
U2AF1Q01081 C5-202ENST00000460578 521 ntTSL 56.42□□□□□ -1.382e-8■□□□□ 10
U2AF1Q01081 YME1L1-208ENST00000491542 912 ntTSL 219.47■□□□□ 0.714e-11■□□□□ 10
U2AF1Q01081 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC19.46■□□□□ 0.714e-11■□□□□ 10
U2AF1Q01081 YME1L1-209ENST00000613434 4127 ntTSL 2 BASIC13.21□□□□□ -0.294e-11■□□□□ 10
U2AF1Q01081 YME1L1-206ENST00000463270 745 ntTSL 311.53□□□□□ -0.564e-11■□□□□ 10
U2AF1Q01081 YME1L1-203ENST00000376016 3856 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.754e-11■□□□□ 10
U2AF1Q01081 YME1L1-201ENST00000326799 3994 ntTSL 1 (best) BASIC9.99□□□□□ -0.814e-11■□□□□ 10
U2AF1Q01081 UFD1-206ENST00000466373 3059 ntTSL 213.52□□□□□ -0.247e-17■□□□□ 9.9
U2AF1Q01081 EPB41L2-219ENST00000528179 560 ntTSL 58.35□□□□□ -1.071e-9■□□□□ 9.9
U2AF1Q01081 EPB41L2-212ENST00000526333 549 ntTSL 57.71□□□□□ -1.181e-9■□□□□ 9.9
U2AF1Q01081 NOP56-206ENST00000466447 1094 ntTSL 215.9■□□□□ 0.142e-8■□□□□ 9.9
U2AF1Q01081 NOP56-212ENST00000480447 651 ntTSL 28.29□□□□□ -1.082e-8■□□□□ 9.9
U2AF1Q01081 SRRM2-221ENST00000574866 638 ntTSL 323.81■■□□□ 1.47e-11■□□□□ 9.9
U2AF1Q01081 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.562e-7■□□□□ 9.9
U2AF1Q01081 AP1G2-204ENST00000465445 2554 ntTSL 516.97■□□□□ 0.312e-7■□□□□ 9.9
U2AF1Q01081 AP1G2-205ENST00000535852 2471 ntTSL 1 (best)16.6■□□□□ 0.252e-7■□□□□ 9.9
U2AF1Q01081 AP1G2-203ENST00000460049 2672 ntTSL 1 (best)16.38■□□□□ 0.212e-7■□□□□ 9.9
U2AF1Q01081 AP1G2-202ENST00000397120 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.022e-7■□□□□ 9.9
U2AF1Q01081 HSPA8-203ENST00000524552 963 ntTSL 1 (best)16.23■□□□□ 0.197e-10■□□□□ 9.8
U2AF1Q01081 GTPBP2-203ENST00000419497 1394 ntTSL 221.13■□□□□ 0.972e-8■□□□□ 9.8
U2AF1Q01081 GTPBP2-204ENST00000432918 1850 ntTSL 316.35■□□□□ 0.212e-8■□□□□ 9.8
U2AF1Q01081 GTPBP2-210ENST00000496137 516 ntTSL 39.03□□□□□ -0.962e-8■□□□□ 9.8
U2AF1Q01081 SRRM2-226ENST00000576415 461 ntTSL 234.34■■■■□ 3.095e-9■□□□□ 9.8
U2AF1Q01081 SRRM2-223ENST00000575701 860 ntTSL 333.84■■■■□ 3.015e-9■□□□□ 9.8
U2AF1Q01081 RPL12-204ENST00000497825 864 ntTSL 223.6■■□□□ 1.371e-7■□□□□ 9.8
U2AF1Q01081 RPL12-203ENST00000497322 2275 ntTSL 220.89■□□□□ 0.931e-7■□□□□ 9.8
U2AF1Q01081 RPL12-205ENST00000536368 499 ntTSL 1 (best) BASIC15.1■□□□□ 0.011e-7■□□□□ 9.8
U2AF1Q01081 RPL12-201ENST00000361436 633 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.731e-7■□□□□ 9.8
U2AF1Q01081 BBS2-220ENST00000569342 1525 ntTSL 522.46■■□□□ 1.191e-7■□□□□ 9.8
U2AF1Q01081 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC21.38■■□□□ 1.011e-7■□□□□ 9.8
U2AF1Q01081 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.651e-7■□□□□ 9.8
U2AF1Q01081 NEDD4L-223ENST00000588516 1304 ntTSL 517.97■□□□□ 0.471e-7■□□□□ 9.8
U2AF1Q01081 NEDD4L-232ENST00000591579 144 ntTSL 1 (best)17.45■□□□□ 0.381e-7■□□□□ 9.8
U2AF1Q01081 NEDD4L-233ENST00000591989 233 ntTSL 316.57■□□□□ 0.241e-7■□□□□ 9.8
U2AF1Q01081 BBS2-204ENST00000561951 845 ntTSL 315.82■□□□□ 0.121e-7■□□□□ 9.8
U2AF1Q01081 BBS2-202ENST00000561853 473 ntTSL 315.7■□□□□ 0.11e-7■□□□□ 9.8
U2AF1Q01081 BBS2-205ENST00000562012 865 ntTSL 513.15□□□□□ -0.31e-7■□□□□ 9.8
U2AF1Q01081 BBS2-211ENST00000565781 6073 ntTSL 1 (best)10.58□□□□□ -0.721e-7■□□□□ 9.8
U2AF1Q01081 NEDD4L-236ENST00000592846 484 ntTSL 47.63□□□□□ -1.191e-7■□□□□ 9.8
U2AF1Q01081 NEDD4L-211ENST00000585363 241 ntTSL 57.41□□□□□ -1.221e-7■□□□□ 9.8
U2AF1Q01081 NEDD4L-231ENST00000590694 165 ntTSL 56.8□□□□□ -1.321e-7■□□□□ 9.8
U2AF1Q01081 TFRC-215ENST00000491658 396 ntTSL 54.72□□□□□ -1.653e-7■□□□□ 9.8
U2AF1Q01081 USP36-205ENST00000586531 898 ntTSL 337.13■■■■□ 3.533e-8■□□□□ 9.8
U2AF1Q01081 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC29.47■■■□□ 2.313e-8■□□□□ 9.8
U2AF1Q01081 USP36-220ENST00000591942 564 ntTSL 528.9■■■□□ 2.223e-8■□□□□ 9.8
U2AF1Q01081 USP36-216ENST00000589424 970 ntTSL 5 BASIC26.38■■□□□ 1.813e-8■□□□□ 9.8
U2AF1Q01081 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.653e-8■□□□□ 9.8
U2AF1Q01081 USP36-210ENST00000588086 3187 ntAPPRIS ALT2 TSL 1 (best)19.09■□□□□ 0.653e-8■□□□□ 9.8
U2AF1Q01081 USP36-214ENST00000589225 5885 ntTSL 1 (best)18.37■□□□□ 0.533e-8■□□□□ 9.8
U2AF1Q01081 USP36-206ENST00000586896 696 ntTSL 518.29■□□□□ 0.523e-8■□□□□ 9.8
U2AF1Q01081 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.53e-8■□□□□ 9.8
U2AF1Q01081 USP36-202ENST00000449938 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.43e-8■□□□□ 9.8
U2AF1Q01081 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 35e-6■□□□□ 9.8
U2AF1Q01081 PPP2R2A-218ENST00000522535 653 ntTSL 430.53■■■□□ 2.485e-6■□□□□ 9.8
U2AF1Q01081 ANKHD1-220ENST00000511151 1216 ntTSL 329.1■■■□□ 2.255e-6■□□□□ 9.8
U2AF1Q01081 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC28.64■■■□□ 2.185e-6■□□□□ 9.8
U2AF1Q01081 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC28.57■■■□□ 2.165e-6■□□□□ 9.8
U2AF1Q01081 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC28.45■■■□□ 2.155e-6■□□□□ 9.8
U2AF1Q01081 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC26.85■■□□□ 1.896e-8■□□□□ 9.8
U2AF1Q01081 RIMKLB-201ENST00000299673 2033 ntTSL 1 (best)25.98■■□□□ 1.756e-8■□□□□ 9.8
U2AF1Q01081 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.456e-8■□□□□ 9.8
U2AF1Q01081 MAN2A2-228ENST00000561047 1057 ntTSL 523.93■■□□□ 1.425e-6■□□□□ 9.8
U2AF1Q01081 KANSL1-225ENST00000639356 1717 ntTSL 523.26■■□□□ 1.315e-6■□□□□ 9.8
U2AF1Q01081 SUN1-226ENST00000467483 992 ntTSL 221.81■■□□□ 1.086e-8■□□□□ 9.8
U2AF1Q01081 KANSL1-209ENST00000574655 1681 ntTSL 521.66■■□□□ 1.065e-6■□□□□ 9.8
U2AF1Q01081 KANSL1-222ENST00000639099 1724 ntTSL 520.99■□□□□ 0.955e-6■□□□□ 9.8
U2AF1Q01081 SUN1-204ENST00000403868 978 ntTSL 2 BASIC20.64■□□□□ 0.896e-8■□□□□ 9.8
U2AF1Q01081 SUN1-218ENST00000450881 513 ntTSL 419.67■□□□□ 0.746e-8■□□□□ 9.8
U2AF1Q01081 SUN1-217ENST00000450538 570 ntTSL 418.71■□□□□ 0.596e-8■□□□□ 9.8
U2AF1Q01081 PPP2R2A-206ENST00000518254 755 ntTSL 518.71■□□□□ 0.595e-6■□□□□ 9.8
U2AF1Q01081 PPP2R2A-211ENST00000520329 836 ntTSL 518.71■□□□□ 0.595e-6■□□□□ 9.8
U2AF1Q01081 PPP2R2A-223ENST00000524169 784 ntTSL 317.95■□□□□ 0.465e-6■□□□□ 9.8
U2AF1Q01081 SUN1-201ENST00000340926 2128 ntTSL 517.75■□□□□ 0.436e-8■□□□□ 9.8
U2AF1Q01081 MAN2A2-203ENST00000557990 956 ntTSL 517.63■□□□□ 0.415e-6■□□□□ 9.8
U2AF1Q01081 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC16.83■□□□□ 0.288e-9■□□□□ 9.8
U2AF1Q01081 SUN1-234ENST00000493681 526 ntTSL 316.75■□□□□ 0.276e-8■□□□□ 9.8
U2AF1Q01081 TLK1-205ENST00000431350 5663 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.268e-9■□□□□ 9.8
U2AF1Q01081 HBP1-213ENST00000497535 702 ntTSL 216.42■□□□□ 0.225e-6■□□□□ 9.8
U2AF1Q01081 SUN1-214ENST00000435699 676 ntTSL 316.09■□□□□ 0.176e-8■□□□□ 9.8
U2AF1Q01081 RIMKLB-213ENST00000619374 1519 ntTSL 5 BASIC15.48■□□□□ 0.076e-8■□□□□ 9.8
U2AF1Q01081 MAN2A2-230ENST00000561448 1443 ntTSL 215.13■□□□□ 0.015e-6■□□□□ 9.8
U2AF1Q01081 EHD2-201ENST00000263277 3585 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.036e-8■□□□□ 9.8
Retrieved 100 of 10,096 protein–RNA pairs in 57.6 ms