Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
RAE1P78406 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.3■□□□□ 0.52
RAE1P78406 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.3■□□□□ 0.52
RAE1P78406 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
RAE1P78406 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.3■□□□□ 0.52
RAE1P78406 AC004264.1-201ENST00000608354 794 ntBASIC18.3■□□□□ 0.52
RAE1P78406 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.3■□□□□ 0.52
RAE1P78406 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.3■□□□□ 0.52
RAE1P78406 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RAE1P78406 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.3■□□□□ 0.52
RAE1P78406 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.3■□□□□ 0.52
RAE1P78406 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
RAE1P78406 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
RAE1P78406 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.29■□□□□ 0.52
RAE1P78406 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
RAE1P78406 RNF165-205ENST00000588679 2904 ntBASIC18.29■□□□□ 0.52
RAE1P78406 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RAE1P78406 MIR4651-201ENST00000582622 73 ntBASIC18.29■□□□□ 0.52
RAE1P78406 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.29■□□□□ 0.52
RAE1P78406 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.29■□□□□ 0.52
RAE1P78406 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RAE1P78406 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.29■□□□□ 0.52
RAE1P78406 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RAE1P78406 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RAE1P78406 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
RAE1P78406 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.29■□□□□ 0.52
RAE1P78406 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
RAE1P78406 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
RAE1P78406 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.28■□□□□ 0.52
RAE1P78406 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.28■□□□□ 0.52
RAE1P78406 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
RAE1P78406 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.28■□□□□ 0.52
RAE1P78406 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.28■□□□□ 0.52
RAE1P78406 AC239809.2-201ENST00000415381 517 ntBASIC18.28■□□□□ 0.52
RAE1P78406 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
RAE1P78406 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 AL160286.2-201ENST00000567150 934 ntBASIC18.28■□□□□ 0.52
RAE1P78406 RN7SL471P-201ENST00000580476 299 ntBASIC18.28■□□□□ 0.52
RAE1P78406 AC124016.1-201ENST00000609552 612 ntBASIC18.28■□□□□ 0.52
RAE1P78406 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.28■□□□□ 0.52
RAE1P78406 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 AC073648.6-201ENST00000641589 218 ntBASIC18.28■□□□□ 0.52
RAE1P78406 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.28■□□□□ 0.52
RAE1P78406 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.28■□□□□ 0.52
RAE1P78406 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.28■□□□□ 0.52
RAE1P78406 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
RAE1P78406 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAE1P78406 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RAE1P78406 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RAE1P78406 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.27■□□□□ 0.52
RAE1P78406 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RAE1P78406 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RAE1P78406 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
RAE1P78406 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RAE1P78406 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
RAE1P78406 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RAE1P78406 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RAE1P78406 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.27■□□□□ 0.52
RAE1P78406 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RAE1P78406 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.27■□□□□ 0.52
RAE1P78406 AC006058.3-201ENST00000606217 1069 ntBASIC18.27■□□□□ 0.52
RAE1P78406 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RAE1P78406 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.27■□□□□ 0.52
RAE1P78406 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RAE1P78406 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RAE1P78406 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RAE1P78406 FEM1AP3-201ENST00000403722 1741 ntBASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms