Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HNF4AP41235 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
HNF4AP41235 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HNF4AP41235 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HNF4AP41235 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.66■□□□□ 0.58
HNF4AP41235 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
HNF4AP41235 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
HNF4AP41235 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.66■□□□□ 0.58
HNF4AP41235 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.66■□□□□ 0.58
HNF4AP41235 RPPH1-201ENST00000516869 333 ntBASIC18.66■□□□□ 0.58
HNF4AP41235 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.66■□□□□ 0.58
HNF4AP41235 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.66■□□□□ 0.58
HNF4AP41235 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.66■□□□□ 0.58
HNF4AP41235 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.66■□□□□ 0.58
HNF4AP41235 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HNF4AP41235 AC004264.1-201ENST00000608354 794 ntBASIC18.66■□□□□ 0.58
HNF4AP41235 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HNF4AP41235 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HNF4AP41235 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.66■□□□□ 0.58
HNF4AP41235 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HNF4AP41235 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
HNF4AP41235 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HNF4AP41235 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HNF4AP41235 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.65■□□□□ 0.58
HNF4AP41235 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.65■□□□□ 0.58
HNF4AP41235 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HNF4AP41235 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.65■□□□□ 0.58
HNF4AP41235 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.65■□□□□ 0.58
HNF4AP41235 AL158047.1-201ENST00000445918 881 ntBASIC18.65■□□□□ 0.58
HNF4AP41235 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.65■□□□□ 0.58
HNF4AP41235 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HNF4AP41235 AC124016.1-201ENST00000609552 612 ntBASIC18.65■□□□□ 0.58
HNF4AP41235 FAM197Y4-202ENST00000622692 608 ntBASIC18.65■□□□□ 0.58
HNF4AP41235 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.65■□□□□ 0.58
HNF4AP41235 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.65■□□□□ 0.58
HNF4AP41235 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HNF4AP41235 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HNF4AP41235 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HNF4AP41235 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.65■□□□□ 0.58
HNF4AP41235 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HNF4AP41235 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
HNF4AP41235 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HNF4AP41235 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HNF4AP41235 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.58
HNF4AP41235 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HNF4AP41235 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.58
HNF4AP41235 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.64■□□□□ 0.57
HNF4AP41235 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.64■□□□□ 0.57
HNF4AP41235 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.64■□□□□ 0.57
HNF4AP41235 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.64■□□□□ 0.57
HNF4AP41235 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.64■□□□□ 0.57
HNF4AP41235 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.64■□□□□ 0.57
HNF4AP41235 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
HNF4AP41235 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.64■□□□□ 0.57
HNF4AP41235 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.64■□□□□ 0.57
HNF4AP41235 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.64■□□□□ 0.57
HNF4AP41235 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HNF4AP41235 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.64■□□□□ 0.57
HNF4AP41235 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
HNF4AP41235 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.64■□□□□ 0.57
HNF4AP41235 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.64■□□□□ 0.57
HNF4AP41235 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HNF4AP41235 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
HNF4AP41235 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HNF4AP41235 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
HNF4AP41235 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HNF4AP41235 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms