Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 ZNF815P-204ENST00000434898 1737 ntBASIC17.67■□□□□ 0.42
MSX1P28360 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.66■□□□□ 0.42
MSX1P28360 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX1P28360 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX1P28360 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
MSX1P28360 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.66■□□□□ 0.42
MSX1P28360 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.66■□□□□ 0.42
MSX1P28360 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX1P28360 AC073195.1-201ENST00000607241 877 ntBASIC17.66■□□□□ 0.42
MSX1P28360 AL445675.2-201ENST00000620291 557 ntBASIC17.66■□□□□ 0.42
MSX1P28360 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.66■□□□□ 0.42
MSX1P28360 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
MSX1P28360 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.66■□□□□ 0.42
MSX1P28360 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
MSX1P28360 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.66■□□□□ 0.42
MSX1P28360 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSX1P28360 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.65■□□□□ 0.42
MSX1P28360 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
MSX1P28360 HLA-A-209ENST00000638375 975 ntBASIC17.65■□□□□ 0.42
MSX1P28360 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
MSX1P28360 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.65■□□□□ 0.42
MSX1P28360 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSX1P28360 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
MSX1P28360 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
MSX1P28360 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.42
MSX1P28360 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
MSX1P28360 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
MSX1P28360 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX1P28360 MMP23A-201ENST00000234610 1017 ntBASIC17.64■□□□□ 0.41
MSX1P28360 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX1P28360 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
MSX1P28360 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.64■□□□□ 0.41
MSX1P28360 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.64■□□□□ 0.41
MSX1P28360 AL160286.2-201ENST00000567150 934 ntBASIC17.64■□□□□ 0.41
MSX1P28360 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.64■□□□□ 0.41
MSX1P28360 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.64■□□□□ 0.41
MSX1P28360 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.64■□□□□ 0.41
MSX1P28360 AC131212.4-201ENST00000623606 975 ntBASIC17.64■□□□□ 0.41
MSX1P28360 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.64■□□□□ 0.41
MSX1P28360 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.64■□□□□ 0.41
MSX1P28360 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX1P28360 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
MSX1P28360 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.64■□□□□ 0.41
MSX1P28360 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
MSX1P28360 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX1P28360 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSX1P28360 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.64■□□□□ 0.41
MSX1P28360 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX1P28360 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX1P28360 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
MSX1P28360 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MSX1P28360 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
MSX1P28360 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
MSX1P28360 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 TMPOP1-202ENST00000424642 1267 ntBASIC17.63■□□□□ 0.41
MSX1P28360 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.63■□□□□ 0.41
MSX1P28360 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.63■□□□□ 0.41
MSX1P28360 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
MSX1P28360 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.63■□□□□ 0.41
MSX1P28360 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX1P28360 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms