Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
COL6A3P12111 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.18■□□□□ 0.82
COL6A3P12111 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.18■□□□□ 0.82
COL6A3P12111 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.18■□□□□ 0.82
COL6A3P12111 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.18■□□□□ 0.82
COL6A3P12111 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.18■□□□□ 0.82
COL6A3P12111 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.18■□□□□ 0.82
COL6A3P12111 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.18■□□□□ 0.82
COL6A3P12111 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.18■□□□□ 0.82
COL6A3P12111 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 MED15P5-201ENST00000423150 992 ntBASIC20.18■□□□□ 0.82
COL6A3P12111 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.18■□□□□ 0.82
COL6A3P12111 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.18■□□□□ 0.82
COL6A3P12111 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.18■□□□□ 0.82
COL6A3P12111 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL6A3P12111 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A3P12111 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A3P12111 AC005229.4-201ENST00000610085 2198 ntBASIC20.17■□□□□ 0.82
COL6A3P12111 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A3P12111 MIR662-201ENST00000384847 95 ntBASIC20.17■□□□□ 0.82
COL6A3P12111 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A3P12111 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.17■□□□□ 0.82
COL6A3P12111 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A3P12111 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.17■□□□□ 0.82
COL6A3P12111 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A3P12111 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.17■□□□□ 0.82
COL6A3P12111 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A3P12111 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A3P12111 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.17■□□□□ 0.82
COL6A3P12111 AC116407.3-201ENST00000623905 1129 ntBASIC20.17■□□□□ 0.82
COL6A3P12111 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A3P12111 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
COL6A3P12111 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
COL6A3P12111 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC20.16■□□□□ 0.82
COL6A3P12111 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC20.16■□□□□ 0.82
COL6A3P12111 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.16■□□□□ 0.82
COL6A3P12111 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.16■□□□□ 0.82
COL6A3P12111 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.16■□□□□ 0.82
COL6A3P12111 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.16■□□□□ 0.82
COL6A3P12111 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.16■□□□□ 0.82
COL6A3P12111 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A3P12111 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.16■□□□□ 0.82
COL6A3P12111 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A3P12111 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A3P12111 AC104109.2-201ENST00000602919 1418 ntBASIC20.15■□□□□ 0.82
COL6A3P12111 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.15■□□□□ 0.82
COL6A3P12111 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
COL6A3P12111 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A3P12111 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC20.15■□□□□ 0.82
COL6A3P12111 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A3P12111 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
COL6A3P12111 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.15■□□□□ 0.82
COL6A3P12111 Z69720.1-201ENST00000601483 472 ntBASIC20.15■□□□□ 0.82
COL6A3P12111 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A3P12111 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A3P12111 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.15■□□□□ 0.82
COL6A3P12111 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.15■□□□□ 0.82
COL6A3P12111 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
COL6A3P12111 AC145285.3-201ENST00000564603 959 ntBASIC20.15■□□□□ 0.82
COL6A3P12111 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.15■□□□□ 0.82
COL6A3P12111 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.14■□□□□ 0.82
COL6A3P12111 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL6A3P12111 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.82
COL6A3P12111 IGHV3-47-201ENST00000425060 335 ntBASIC20.14■□□□□ 0.82
COL6A3P12111 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.14■□□□□ 0.82
COL6A3P12111 AL591424.1-201ENST00000442569 1213 ntBASIC20.14■□□□□ 0.82
COL6A3P12111 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC20.14■□□□□ 0.82
COL6A3P12111 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.14■□□□□ 0.82
COL6A3P12111 AL596442.2-201ENST00000610240 980 ntBASIC20.14■□□□□ 0.82
COL6A3P12111 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A3P12111 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
COL6A3P12111 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A3P12111 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A3P12111 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.14■□□□□ 0.81
COL6A3P12111 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.14■□□□□ 0.81
COL6A3P12111 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.14■□□□□ 0.81
COL6A3P12111 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.14■□□□□ 0.81
COL6A3P12111 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A3P12111 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.14■□□□□ 0.81
COL6A3P12111 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.14■□□□□ 0.81
COL6A3P12111 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A3P12111 HLA-V-201ENST00000429037 534 ntBASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms