Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC4P09017 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HOXC4P09017 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.82■□□□□ 0.6
HOXC4P09017 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXC4P09017 AC104076.2-201ENST00000448912 469 ntBASIC18.82■□□□□ 0.6
HOXC4P09017 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.82■□□□□ 0.6
HOXC4P09017 AP003041.3-201ENST00000527151 707 ntBASIC18.82■□□□□ 0.6
HOXC4P09017 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.82■□□□□ 0.6
HOXC4P09017 AL590326.2-201ENST00000625139 305 ntBASIC18.82■□□□□ 0.6
HOXC4P09017 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC4P09017 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
HOXC4P09017 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXC4P09017 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HOXC4P09017 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HOXC4P09017 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC4P09017 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HOXC4P09017 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HOXC4P09017 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
HOXC4P09017 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC4P09017 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.81■□□□□ 0.6
HOXC4P09017 AL049597.2-201ENST00000565575 961 ntBASIC18.81■□□□□ 0.6
HOXC4P09017 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC4P09017 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.81■□□□□ 0.6
HOXC4P09017 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
HOXC4P09017 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC4P09017 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXC4P09017 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HOXC4P09017 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXC4P09017 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC4P09017 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HOXC4P09017 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.8■□□□□ 0.6
HOXC4P09017 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
HOXC4P09017 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HOXC4P09017 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
HOXC4P09017 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HOXC4P09017 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC4P09017 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC4P09017 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.8■□□□□ 0.6
HOXC4P09017 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.8■□□□□ 0.6
HOXC4P09017 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC4P09017 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.8■□□□□ 0.6
HOXC4P09017 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.8■□□□□ 0.6
HOXC4P09017 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
HOXC4P09017 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC4P09017 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC4P09017 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
HOXC4P09017 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 AC125437.2-201ENST00000625180 2167 ntBASIC18.79■□□□□ 0.6
HOXC4P09017 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXC4P09017 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.79■□□□□ 0.6
HOXC4P09017 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXC4P09017 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC4P09017 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HOXC4P09017 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.79■□□□□ 0.6
HOXC4P09017 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.79■□□□□ 0.6
HOXC4P09017 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms